miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14338 5' -51.6 NC_003521.1 + 122824 0.66 0.99862
Target:  5'- cGCUUgAGcUCGUGGAUG-GCgucGCGc -3'
miRNA:   3'- -CGAAgUCuAGCACCUGCaCGaa-CGCc -5'
14338 5' -51.6 NC_003521.1 + 100213 0.66 0.99862
Target:  5'- cGCUgCAGGUCGUaGGcCG-GCgagGUGGa -3'
miRNA:   3'- -CGAaGUCUAGCA-CCuGCaCGaa-CGCC- -5'
14338 5' -51.6 NC_003521.1 + 130760 0.66 0.998349
Target:  5'- cCUUCGGGUaCGgacuGACGcUGCUgucgGCGGg -3'
miRNA:   3'- cGAAGUCUA-GCac--CUGC-ACGAa---CGCC- -5'
14338 5' -51.6 NC_003521.1 + 114761 0.66 0.997672
Target:  5'- uGCUUCAGGgguugcguagCGUGGugGaGCccgGCGa -3'
miRNA:   3'- -CGAAGUCUa---------GCACCugCaCGaa-CGCc -5'
14338 5' -51.6 NC_003521.1 + 150537 0.66 0.997255
Target:  5'- aGCcgUgGGGUCcggcgGUGGugGUGCggGUGGu -3'
miRNA:   3'- -CGa-AgUCUAG-----CACCugCACGaaCGCC- -5'
14338 5' -51.6 NC_003521.1 + 173628 0.66 0.997119
Target:  5'- aGCUUCAGGUUGagcaggguguugguUcGGGCG-GCUgcGCGGg -3'
miRNA:   3'- -CGAAGUCUAGC--------------A-CCUGCaCGAa-CGCC- -5'
14338 5' -51.6 NC_003521.1 + 76415 0.67 0.995617
Target:  5'- aGCggCGG--UGUGGugGUGCUgGCGa -3'
miRNA:   3'- -CGaaGUCuaGCACCugCACGAaCGCc -5'
14338 5' -51.6 NC_003521.1 + 197843 0.67 0.994136
Target:  5'- uCUgCAGGUCGUcGGugG-GCgccgGCGGg -3'
miRNA:   3'- cGAaGUCUAGCA-CCugCaCGaa--CGCC- -5'
14338 5' -51.6 NC_003521.1 + 87245 0.67 0.994136
Target:  5'- uGCUgCAGGUgGUGGAgcggcUGUGCgccgUGCGc -3'
miRNA:   3'- -CGAaGUCUAgCACCU-----GCACGa---ACGCc -5'
14338 5' -51.6 NC_003521.1 + 197645 0.68 0.992276
Target:  5'- ---aCAGGUCGcGGugGcGCUcgUGCGGc -3'
miRNA:   3'- cgaaGUCUAGCaCCugCaCGA--ACGCC- -5'
14338 5' -51.6 NC_003521.1 + 49873 0.68 0.992172
Target:  5'- uGC-UCAugauggcGGUCGUGG-CGUGCgUGUGGc -3'
miRNA:   3'- -CGaAGU-------CUAGCACCuGCACGaACGCC- -5'
14338 5' -51.6 NC_003521.1 + 97155 0.68 0.989974
Target:  5'- aGCUUCcaguGGUCGUGGugGaagagGUccgUGUGGa -3'
miRNA:   3'- -CGAAGu---CUAGCACCugCa----CGa--ACGCC- -5'
14338 5' -51.6 NC_003521.1 + 150634 0.68 0.988638
Target:  5'- uGCUgcgCAGG-CGgGGGCGUGCgcgacgaagGCGGc -3'
miRNA:   3'- -CGAa--GUCUaGCaCCUGCACGaa-------CGCC- -5'
14338 5' -51.6 NC_003521.1 + 57162 0.68 0.988355
Target:  5'- cGCggCAGGUCGUcGGCGUGCcgcagcacgaaGCGGc -3'
miRNA:   3'- -CGaaGUCUAGCAcCUGCACGaa---------CGCC- -5'
14338 5' -51.6 NC_003521.1 + 101846 0.69 0.985555
Target:  5'- gGCUcCGGGUUGUGGAUG-GCggacUGCGu -3'
miRNA:   3'- -CGAaGUCUAGCACCUGCaCGa---ACGCc -5'
14338 5' -51.6 NC_003521.1 + 168477 0.69 0.983792
Target:  5'- gGCUggUCAGGUCGaucaUGGGCG-GCgagacggagGCGGa -3'
miRNA:   3'- -CGA--AGUCUAGC----ACCUGCaCGaa-------CGCC- -5'
14338 5' -51.6 NC_003521.1 + 225833 0.7 0.975079
Target:  5'- cGCUUguGGuccacggcgcgcUCGUGGugGUGCggGCa- -3'
miRNA:   3'- -CGAAguCU------------AGCACCugCACGaaCGcc -5'
14338 5' -51.6 NC_003521.1 + 153322 0.7 0.972449
Target:  5'- cGCUuucUCAGcgaCGUGGAUGUGCUggGCa- -3'
miRNA:   3'- -CGA---AGUCua-GCACCUGCACGAa-CGcc -5'
14338 5' -51.6 NC_003521.1 + 229244 0.7 0.969623
Target:  5'- ---gCGGGcCGcGGAgGUGCUUGCGGu -3'
miRNA:   3'- cgaaGUCUaGCaCCUgCACGAACGCC- -5'
14338 5' -51.6 NC_003521.1 + 91685 0.71 0.952374
Target:  5'- cGCagCGGGcUCcUGGGCGUGCU-GCGGu -3'
miRNA:   3'- -CGaaGUCU-AGcACCUGCACGAaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.