miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1434 3' -54.3 NC_001335.1 + 44456 0.66 0.77136
Target:  5'- gAUGGGUCGAacUCGAGCAcuaagucgucGUCGcGgAGCa -3'
miRNA:   3'- -UGCUCAGCU--AGUUCGU----------CAGC-CgUCGg -5'
1434 3' -54.3 NC_001335.1 + 38363 0.66 0.761089
Target:  5'- gGCGAGUCG--CGGGCuGGcCGGCcgagcggaacuaAGCCg -3'
miRNA:   3'- -UGCUCAGCuaGUUCG-UCaGCCG------------UCGG- -5'
1434 3' -54.3 NC_001335.1 + 2486 0.66 0.761089
Target:  5'- ---cGUUGAUCuggcaAAGcCAGUUGGCAGCa -3'
miRNA:   3'- ugcuCAGCUAG-----UUC-GUCAGCCGUCGg -5'
1434 3' -54.3 NC_001335.1 + 32829 0.66 0.761089
Target:  5'- uCGAGUCGcgCAcAGCAGcCGa-GGCCg -3'
miRNA:   3'- uGCUCAGCuaGU-UCGUCaGCcgUCGG- -5'
1434 3' -54.3 NC_001335.1 + 34445 0.66 0.750683
Target:  5'- uGCGuGUCGAUCAGaucgacCAGcgCaGCAGCCc -3'
miRNA:   3'- -UGCuCAGCUAGUUc-----GUCa-GcCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 50747 0.66 0.750683
Target:  5'- gACGAGUCG-UCGGcCGGg-GGCGGCg -3'
miRNA:   3'- -UGCUCAGCuAGUUcGUCagCCGUCGg -5'
1434 3' -54.3 NC_001335.1 + 11318 0.66 0.750683
Target:  5'- uCGGGUCaccGUUcAGCGGgaUCGGCGGCUu -3'
miRNA:   3'- uGCUCAGc--UAGuUCGUC--AGCCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 7972 0.66 0.746486
Target:  5'- -aGAuGUCGAUgAcgaacAGCAGgccgucgcugacaCGGCAGCCg -3'
miRNA:   3'- ugCU-CAGCUAgU-----UCGUCa------------GCCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 21807 0.66 0.74438
Target:  5'- aACGAGUCGAUCAaccucgagcgccgugAGCGGaUCGaaGgAGaCCg -3'
miRNA:   3'- -UGCUCAGCUAGU---------------UCGUC-AGC--CgUC-GG- -5'
1434 3' -54.3 NC_001335.1 + 9275 0.66 0.729514
Target:  5'- cUGAGggcaaGAUCcAGCAGUUcucuGCAGCCg -3'
miRNA:   3'- uGCUCag---CUAGuUCGUCAGc---CGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 22866 0.66 0.729514
Target:  5'- gACGAccaacGUC-AUCuucuGGUAGUCGGUGGCUg -3'
miRNA:   3'- -UGCU-----CAGcUAGu---UCGUCAGCCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 3684 0.66 0.729514
Target:  5'- aACGuGUCGAagAAGUcGUUcGCGGCCu -3'
miRNA:   3'- -UGCuCAGCUagUUCGuCAGcCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 49454 0.66 0.729514
Target:  5'- uCGuGGUUGAUgGcuCGGUgGGCAGCCu -3'
miRNA:   3'- uGC-UCAGCUAgUucGUCAgCCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 14199 0.67 0.675057
Target:  5'- -aGGGUCuGAUCAGGC--UCGGCGuCCg -3'
miRNA:   3'- ugCUCAG-CUAGUUCGucAGCCGUcGG- -5'
1434 3' -54.3 NC_001335.1 + 7843 0.67 0.675057
Target:  5'- gACGGGUCGAagucCAAcgacuggaccgcGCucGUCGGCuGCCg -3'
miRNA:   3'- -UGCUCAGCUa---GUU------------CGu-CAGCCGuCGG- -5'
1434 3' -54.3 NC_001335.1 + 1563 0.67 0.663996
Target:  5'- cCG-GUCGAcUCAAGUcgcuguucgaGGUCGGCuucucAGCCg -3'
miRNA:   3'- uGCuCAGCU-AGUUCG----------UCAGCCG-----UCGG- -5'
1434 3' -54.3 NC_001335.1 + 37844 0.68 0.652904
Target:  5'- uCGGGaUGAuUCGGGCGuUCGGCAGCg -3'
miRNA:   3'- uGCUCaGCU-AGUUCGUcAGCCGUCGg -5'
1434 3' -54.3 NC_001335.1 + 17598 0.68 0.652904
Target:  5'- gGCGGGaUGGUCAGcGCAG-CGGUcaacaaGGCCa -3'
miRNA:   3'- -UGCUCaGCUAGUU-CGUCaGCCG------UCGG- -5'
1434 3' -54.3 NC_001335.1 + 45309 0.68 0.630673
Target:  5'- uACGGGUUcGUCGGGCcgcuGUCGGCgaAGUCc -3'
miRNA:   3'- -UGCUCAGcUAGUUCGu---CAGCCG--UCGG- -5'
1434 3' -54.3 NC_001335.1 + 5529 0.68 0.630673
Target:  5'- gGCGGGcUCGAc---GCugAGUCGGCGGCUg -3'
miRNA:   3'- -UGCUC-AGCUaguuCG--UCAGCCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.