Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1434 | 3' | -54.3 | NC_001335.1 | + | 38363 | 0.66 | 0.761089 |
Target: 5'- gGCGAGUCG--CGGGCuGGcCGGCcgagcggaacuaAGCCg -3' miRNA: 3'- -UGCUCAGCuaGUUCG-UCaGCCG------------UCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 26623 | 0.74 | 0.306634 |
Target: 5'- cGCGAGUCGGUCGAGgAGcugaugcgacccaUCGGCaaguaGGCUg -3' miRNA: 3'- -UGCUCAGCUAGUUCgUC-------------AGCCG-----UCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 24919 | 0.74 | 0.307402 |
Target: 5'- cCGuGcCgGAUCGAGCAGaaGGCAGCCg -3' miRNA: 3'- uGCuCaG-CUAGUUCGUCagCCGUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 18871 | 0.74 | 0.307402 |
Target: 5'- gACGGGUCGAaCcGGguGUCGGUcuuggucuuGGCCg -3' miRNA: 3'- -UGCUCAGCUaGuUCguCAGCCG---------UCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 2947 | 0.72 | 0.419657 |
Target: 5'- gGCGAGUCGGgcCAucuGcCAGUCGGuCGGCUc -3' miRNA: 3'- -UGCUCAGCUa-GUu--C-GUCAGCC-GUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 37727 | 0.7 | 0.531773 |
Target: 5'- aGCGAGUCaaaGA-CAAGCuGaCGGCuGCCg -3' miRNA: 3'- -UGCUCAG---CUaGUUCGuCaGCCGuCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 8914 | 0.69 | 0.553402 |
Target: 5'- -gGGGUCGAUCucGGCgugcauucgGGUgGGCGGCUc -3' miRNA: 3'- ugCUCAGCUAGu-UCG---------UCAgCCGUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 33469 | 0.68 | 0.608446 |
Target: 5'- aGCGAcaUGGcCGAGCugcggaGGUUGGCAGCCg -3' miRNA: 3'- -UGCUcaGCUaGUUCG------UCAGCCGUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 12125 | 0.68 | 0.619554 |
Target: 5'- gACGuGGUCGcUCAGGaUGGUCGGacgGGCCa -3' miRNA: 3'- -UGC-UCAGCuAGUUC-GUCAGCCg--UCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 3074 | 0.68 | 0.619554 |
Target: 5'- cGCGGcGUCGGUCAccuuCGGUCaGCAGCa -3' miRNA: 3'- -UGCU-CAGCUAGUuc--GUCAGcCGUCGg -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 2486 | 0.66 | 0.761089 |
Target: 5'- ---cGUUGAUCuggcaAAGcCAGUUGGCAGCa -3' miRNA: 3'- ugcuCAGCUAG-----UUC-GUCAGCCGUCGg -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 11318 | 0.66 | 0.750683 |
Target: 5'- uCGGGUCaccGUUcAGCGGgaUCGGCGGCUu -3' miRNA: 3'- uGCUCAGc--UAGuUCGUC--AGCCGUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 7972 | 0.66 | 0.746486 |
Target: 5'- -aGAuGUCGAUgAcgaacAGCAGgccgucgcugacaCGGCAGCCg -3' miRNA: 3'- ugCU-CAGCUAgU-----UCGUCa------------GCCGUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 3684 | 0.66 | 0.729514 |
Target: 5'- aACGuGUCGAagAAGUcGUUcGCGGCCu -3' miRNA: 3'- -UGCuCAGCUagUUCGuCAGcCGUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 22866 | 0.66 | 0.729514 |
Target: 5'- gACGAccaacGUC-AUCuucuGGUAGUCGGUGGCUg -3' miRNA: 3'- -UGCU-----CAGcUAGu---UCGUCAGCCGUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 45309 | 0.68 | 0.630673 |
Target: 5'- uACGGGUUcGUCGGGCcgcuGUCGGCgaAGUCc -3' miRNA: 3'- -UGCUCAGcUAGUUCGu---CAGCCG--UCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 44456 | 0.66 | 0.77136 |
Target: 5'- gAUGGGUCGAacUCGAGCAcuaagucgucGUCGcGgAGCa -3' miRNA: 3'- -UGCUCAGCU--AGUUCGU----------CAGC-CgUCGg -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 48793 | 0.72 | 0.391621 |
Target: 5'- uCGAGgUGGUCGAGCAGgacgCGGCGaCCg -3' miRNA: 3'- uGCUCaGCUAGUUCGUCa---GCCGUcGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 47645 | 0.69 | 0.542552 |
Target: 5'- cCGAGccUCGGUCucggcGUAGUgGGCAGCUu -3' miRNA: 3'- uGCUC--AGCUAGuu---CGUCAgCCGUCGG- -5' |
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1434 | 3' | -54.3 | NC_001335.1 | + | 40321 | 0.68 | 0.619554 |
Target: 5'- -aGAGUUGAUCAGcGCAGUUcgaugucgGGCAggaucGCCu -3' miRNA: 3'- ugCUCAGCUAGUU-CGUCAG--------CCGU-----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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