miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1434 3' -54.3 NC_001335.1 + 32829 0.66 0.761089
Target:  5'- uCGAGUCGcgCAcAGCAGcCGa-GGCCg -3'
miRNA:   3'- uGCUCAGCuaGU-UCGUCaGCcgUCGG- -5'
1434 3' -54.3 NC_001335.1 + 33469 0.68 0.608446
Target:  5'- aGCGAcaUGGcCGAGCugcggaGGUUGGCAGCCg -3'
miRNA:   3'- -UGCUcaGCUaGUUCG------UCAGCCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 34445 0.66 0.750683
Target:  5'- uGCGuGUCGAUCAGaucgacCAGcgCaGCAGCCc -3'
miRNA:   3'- -UGCuCAGCUAGUUc-----GUCa-GcCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 37727 0.7 0.531773
Target:  5'- aGCGAGUCaaaGA-CAAGCuGaCGGCuGCCg -3'
miRNA:   3'- -UGCUCAG---CUaGUUCGuCaGCCGuCGG- -5'
1434 3' -54.3 NC_001335.1 + 37844 0.68 0.652904
Target:  5'- uCGGGaUGAuUCGGGCGuUCGGCAGCg -3'
miRNA:   3'- uGCUCaGCU-AGUUCGUcAGCCGUCGg -5'
1434 3' -54.3 NC_001335.1 + 38363 0.66 0.761089
Target:  5'- gGCGAGUCG--CGGGCuGGcCGGCcgagcggaacuaAGCCg -3'
miRNA:   3'- -UGCUCAGCuaGUUCG-UCaGCCG------------UCGG- -5'
1434 3' -54.3 NC_001335.1 + 40321 0.68 0.619554
Target:  5'- -aGAGUUGAUCAGcGCAGUUcgaugucgGGCAggaucGCCu -3'
miRNA:   3'- ugCUCAGCUAGUU-CGUCAG--------CCGU-----CGG- -5'
1434 3' -54.3 NC_001335.1 + 44456 0.66 0.77136
Target:  5'- gAUGGGUCGAacUCGAGCAcuaagucgucGUCGcGgAGCa -3'
miRNA:   3'- -UGCUCAGCU--AGUUCGU----------CAGC-CgUCGg -5'
1434 3' -54.3 NC_001335.1 + 45309 0.68 0.630673
Target:  5'- uACGGGUUcGUCGGGCcgcuGUCGGCgaAGUCc -3'
miRNA:   3'- -UGCUCAGcUAGUUCGu---CAGCCG--UCGG- -5'
1434 3' -54.3 NC_001335.1 + 47645 0.69 0.542552
Target:  5'- cCGAGccUCGGUCucggcGUAGUgGGCAGCUu -3'
miRNA:   3'- uGCUC--AGCUAGuu---CGUCAgCCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 48793 0.72 0.391621
Target:  5'- uCGAGgUGGUCGAGCAGgacgCGGCGaCCg -3'
miRNA:   3'- uGCUCaGCUAGUUCGUCa---GCCGUcGG- -5'
1434 3' -54.3 NC_001335.1 + 49454 0.66 0.729514
Target:  5'- uCGuGGUUGAUgGcuCGGUgGGCAGCCu -3'
miRNA:   3'- uGC-UCAGCUAgUucGUCAgCCGUCGG- -5'
1434 3' -54.3 NC_001335.1 + 50747 0.66 0.750683
Target:  5'- gACGAGUCG-UCGGcCGGg-GGCGGCg -3'
miRNA:   3'- -UGCUCAGCuAGUUcGUCagCCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.