miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 33695 1.08 0.002882
Target:  5'- cGUAACGCUGCAGCUGGACUCCGCCCAa -3'
miRNA:   3'- -CAUUGCGACGUCGACCUGAGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 122858 0.78 0.278833
Target:  5'- cGUAGCGCUGguGCUGGcCgCCGCCgCGa -3'
miRNA:   3'- -CAUUGCGACguCGACCuGaGGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 216615 0.77 0.333548
Target:  5'- cUggUGCUGCuGUUGGACgacguUCCGCCCAu -3'
miRNA:   3'- cAuuGCGACGuCGACCUG-----AGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 170084 0.76 0.371551
Target:  5'- cGgcGCGCUGCAGCUGGACgaagUGCCg- -3'
miRNA:   3'- -CauUGCGACGUCGACCUGag--GCGGgu -5'
14340 5' -57.9 NC_003521.1 + 65517 0.74 0.455913
Target:  5'- -gAGCGCUGuCAGCUGGGCgacgCCGagaCCGu -3'
miRNA:   3'- caUUGCGAC-GUCGACCUGa---GGCg--GGU- -5'
14340 5' -57.9 NC_003521.1 + 133646 0.74 0.455913
Target:  5'- -aAGCuGCUGCuGCUGGAC-CUGCCCc -3'
miRNA:   3'- caUUG-CGACGuCGACCUGaGGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 125407 0.73 0.50178
Target:  5'- uGUGcUGCUGCAGCgGGAUgaUCuCGCCCAc -3'
miRNA:   3'- -CAUuGCGACGUCGaCCUG--AG-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 13712 0.73 0.511199
Target:  5'- -gAGCGCUGCgccagGGCUGGGaaCCGCUCAg -3'
miRNA:   3'- caUUGCGACG-----UCGACCUgaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 113713 0.73 0.520691
Target:  5'- -aGACGCUGCuGgUGGACcucuucuaCCGCCCGa -3'
miRNA:   3'- caUUGCGACGuCgACCUGa-------GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 167768 0.72 0.566135
Target:  5'- cGUGGCGCUGguGUUGGAaccggugcuauuuuCUCCGUCa- -3'
miRNA:   3'- -CAUUGCGACguCGACCU--------------GAGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 137318 0.72 0.578898
Target:  5'- --cGCGcCUGCuGCUGGGCUC-GCCCu -3'
miRNA:   3'- cauUGC-GACGuCGACCUGAGgCGGGu -5'
14340 5' -57.9 NC_003521.1 + 111401 0.72 0.578899
Target:  5'- --cGCGCUGCAGC-GG-CUCC-CCCAu -3'
miRNA:   3'- cauUGCGACGUCGaCCuGAGGcGGGU- -5'
14340 5' -57.9 NC_003521.1 + 49799 0.72 0.598649
Target:  5'- -aGACGCUGCcgcccgaauGGCUGGGCgCCGUgCAg -3'
miRNA:   3'- caUUGCGACG---------UCGACCUGaGGCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 158109 0.72 0.608562
Target:  5'- -cAACGCaGCcucguuGCUGGACUUgGCCCGc -3'
miRNA:   3'- caUUGCGaCGu-----CGACCUGAGgCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 956 0.72 0.608563
Target:  5'- cGUGGucCGCUGCAGaggaaUGGGCuUCCGCgCCAc -3'
miRNA:   3'- -CAUU--GCGACGUCg----ACCUG-AGGCG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 166164 0.71 0.628432
Target:  5'- -aGGCGCUGCAGCagaggGGGgUUCaGCCCGu -3'
miRNA:   3'- caUUGCGACGUCGa----CCUgAGG-CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 59550 0.71 0.648312
Target:  5'- ----gGCUGCAGCUGGACgCCGUg-- -3'
miRNA:   3'- cauugCGACGUCGACCUGaGGCGggu -5'
14340 5' -57.9 NC_003521.1 + 137841 0.71 0.648312
Target:  5'- --cACGCcGCGGCUGGGCcgccCCGCCa- -3'
miRNA:   3'- cauUGCGaCGUCGACCUGa---GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 59355 0.71 0.652285
Target:  5'- --cACGCUGCAggcggcgcgccagccGCUGGACgCCGCgCAg -3'
miRNA:   3'- cauUGCGACGU---------------CGACCUGaGGCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 103006 0.7 0.668144
Target:  5'- -gAGCGCcuuaauaaUGCAGCUGcGCucgUCCGCCCGg -3'
miRNA:   3'- caUUGCG--------ACGUCGACcUG---AGGCGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.