miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 956 0.72 0.608563
Target:  5'- cGUGGucCGCUGCAGaggaaUGGGCuUCCGCgCCAc -3'
miRNA:   3'- -CAUU--GCGACGUCg----ACCUG-AGGCG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 1632 0.68 0.782517
Target:  5'- -gGugGCUGUuuCUGGGCgucgugCUGCCCAg -3'
miRNA:   3'- caUugCGACGucGACCUGa-----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 5215 0.69 0.773487
Target:  5'- -------cGCGGUcGGGCUCCGCCCGa -3'
miRNA:   3'- cauugcgaCGUCGaCCUGAGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 7798 0.66 0.877388
Target:  5'- -cAGCGCUcgaagcgGCAGCUGGACggcgucaaggccaUCCgGCgCCAg -3'
miRNA:   3'- caUUGCGA-------CGUCGACCUG-------------AGG-CG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 13712 0.73 0.511199
Target:  5'- -gAGCGCUGCgccagGGCUGGGaaCCGCUCAg -3'
miRNA:   3'- caUUGCGACG-----UCGACCUgaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 14108 0.67 0.871758
Target:  5'- -gGACGCUGCcuguGuCUGGG-UCCGCCgAa -3'
miRNA:   3'- caUUGCGACGu---C-GACCUgAGGCGGgU- -5'
14340 5' -57.9 NC_003521.1 + 17177 0.7 0.718064
Target:  5'- -cAGCGCUGgCAGCUGGGCaggcgcaucguggaCGCCUAc -3'
miRNA:   3'- caUUGCGAC-GUCGACCUGag------------GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 18798 0.66 0.904728
Target:  5'- -cAGCGCUGCuuucGCgUGGccaaguGCUucCCGCCCAc -3'
miRNA:   3'- caUUGCGACGu---CG-ACC------UGA--GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 18923 0.66 0.898564
Target:  5'- gGUGGCGCcGCGcGCcGGcaaUCCGCCCc -3'
miRNA:   3'- -CAUUGCGaCGU-CGaCCug-AGGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 19663 0.68 0.825596
Target:  5'- cUGGgGCUGCugcGCUGGGCcgaGCCCAa -3'
miRNA:   3'- cAUUgCGACGu--CGACCUGaggCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 27103 0.67 0.871758
Target:  5'- -cGGCGCcGUcuGGCUGGGCaUCCccgagGCCCAc -3'
miRNA:   3'- caUUGCGaCG--UCGACCUG-AGG-----CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 28776 0.66 0.892182
Target:  5'- cUAGCGCUGCAcuuuCUGcGCUCCgacaaGCCCGu -3'
miRNA:   3'- cAUUGCGACGUc---GACcUGAGG-----CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 29833 0.69 0.773487
Target:  5'- gGgcACGCUGCAGaugcacGGACUguucaCGCCCGg -3'
miRNA:   3'- -CauUGCGACGUCga----CCUGAg----GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 33033 0.66 0.878775
Target:  5'- -cAGCGCcgugccauagaGCAGCacgUGGAUgCCGCCCAg -3'
miRNA:   3'- caUUGCGa----------CGUCG---ACCUGaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 33695 1.08 0.002882
Target:  5'- cGUAACGCUGCAGCUGGACUCCGCCCAa -3'
miRNA:   3'- -CAUUGCGACGUCGACCUGAGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 44361 0.7 0.697665
Target:  5'- --cGCGCUGgGGCUGcGGCcCaCGCCCGa -3'
miRNA:   3'- cauUGCGACgUCGAC-CUGaG-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 47397 0.66 0.878775
Target:  5'- -gGGCGCUGCgcgagcggAGCUGGAUguagcaUCGCUCGg -3'
miRNA:   3'- caUUGCGACG--------UCGACCUGa-----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 49799 0.72 0.598649
Target:  5'- -aGACGCUGCcgcccgaauGGCUGGGCgCCGUgCAg -3'
miRNA:   3'- caUUGCGACG---------UCGACCUGaGGCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 50211 0.67 0.840929
Target:  5'- cUGACGCuacUGCGGCUGGugUggaguuaCCGCUg- -3'
miRNA:   3'- cAUUGCG---ACGUCGACCugA-------GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 50274 0.69 0.726718
Target:  5'- ---cCGCUGCAGCcGGG-UCCGCCg- -3'
miRNA:   3'- cauuGCGACGUCGaCCUgAGGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.