miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 125102 0.68 0.79142
Target:  5'- -aGGCGCUGCGGgaUGGGCaccacggCCGCCg- -3'
miRNA:   3'- caUUGCGACGUCg-ACCUGa------GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 44361 0.7 0.697665
Target:  5'- --cGCGCUGgGGCUGcGGCcCaCGCCCGa -3'
miRNA:   3'- cauUGCGACgUCGAC-CUGaG-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 66958 0.7 0.697665
Target:  5'- cUGGCGCUGCGGCaGGACgagCgcaGCCUg -3'
miRNA:   3'- cAUUGCGACGUCGaCCUGa--Gg--CGGGu -5'
14340 5' -57.9 NC_003521.1 + 50274 0.69 0.726718
Target:  5'- ---cCGCUGCAGCcGGG-UCCGCCg- -3'
miRNA:   3'- cauuGCGACGUCGaCCUgAGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 110098 0.69 0.755078
Target:  5'- --cGCGCUGCGGUcaagcGGGCUCugacagCGCCCGu -3'
miRNA:   3'- cauUGCGACGUCGa----CCUGAG------GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 114309 0.69 0.755078
Target:  5'- aUAACGCcGCGGacCUGGGCUucugCCGCCUg -3'
miRNA:   3'- cAUUGCGaCGUC--GACCUGA----GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 119179 0.69 0.773487
Target:  5'- -cGGCGC-GCAGCUGGAUcuggggCCGCUUg -3'
miRNA:   3'- caUUGCGaCGUCGACCUGa-----GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 201859 0.68 0.782517
Target:  5'- -gGugGCUGUuuCUGGGCgucgugCUGCCCAg -3'
miRNA:   3'- caUugCGACGucGACCUGa-----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 236345 0.68 0.782517
Target:  5'- ----gGuCUGCucuGCUGGAUcgCCGCCCAg -3'
miRNA:   3'- cauugC-GACGu--CGACCUGa-GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 142687 0.7 0.687865
Target:  5'- -cGGCgGCaGCAGCUaccacGGACUCCGCgCCGc -3'
miRNA:   3'- caUUG-CGaCGUCGA-----CCUGAGGCG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 105616 0.7 0.687865
Target:  5'- -aGGCGCUGCAGCaGGGCg-UGCUCGg -3'
miRNA:   3'- caUUGCGACGUCGaCCUGagGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 59355 0.71 0.652285
Target:  5'- --cACGCUGCAggcggcgcgccagccGCUGGACgCCGCgCAg -3'
miRNA:   3'- cauUGCGACGU---------------CGACCUGaGGCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 65517 0.74 0.455913
Target:  5'- -gAGCGCUGuCAGCUGGGCgacgCCGagaCCGu -3'
miRNA:   3'- caUUGCGAC-GUCGACCUGa---GGCg--GGU- -5'
14340 5' -57.9 NC_003521.1 + 133646 0.74 0.455913
Target:  5'- -aAGCuGCUGCuGCUGGAC-CUGCCCc -3'
miRNA:   3'- caUUG-CGACGuCGACCUGaGGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 125407 0.73 0.50178
Target:  5'- uGUGcUGCUGCAGCgGGAUgaUCuCGCCCAc -3'
miRNA:   3'- -CAUuGCGACGUCGaCCUG--AG-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 167768 0.72 0.566135
Target:  5'- cGUGGCGCUGguGUUGGAaccggugcuauuuuCUCCGUCa- -3'
miRNA:   3'- -CAUUGCGACguCGACCU--------------GAGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 111401 0.72 0.578899
Target:  5'- --cGCGCUGCAGC-GG-CUCC-CCCAu -3'
miRNA:   3'- cauUGCGACGUCGaCCuGAGGcGGGU- -5'
14340 5' -57.9 NC_003521.1 + 956 0.72 0.608563
Target:  5'- cGUGGucCGCUGCAGaggaaUGGGCuUCCGCgCCAc -3'
miRNA:   3'- -CAUU--GCGACGUCg----ACCUG-AGGCG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 166164 0.71 0.628432
Target:  5'- -aGGCGCUGCAGCagaggGGGgUUCaGCCCGu -3'
miRNA:   3'- caUUGCGACGUCGa----CCUgAGG-CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 137841 0.71 0.648312
Target:  5'- --cACGCcGCGGCUGGGCcgccCCGCCa- -3'
miRNA:   3'- cauUGCGaCGUCGACCUGa---GGCGGgu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.