Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14340 | 5' | -57.9 | NC_003521.1 | + | 125102 | 0.68 | 0.79142 |
Target: 5'- -aGGCGCUGCGGgaUGGGCaccacggCCGCCg- -3' miRNA: 3'- caUUGCGACGUCg-ACCUGa------GGCGGgu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 44361 | 0.7 | 0.697665 |
Target: 5'- --cGCGCUGgGGCUGcGGCcCaCGCCCGa -3' miRNA: 3'- cauUGCGACgUCGAC-CUGaG-GCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 66958 | 0.7 | 0.697665 |
Target: 5'- cUGGCGCUGCGGCaGGACgagCgcaGCCUg -3' miRNA: 3'- cAUUGCGACGUCGaCCUGa--Gg--CGGGu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 50274 | 0.69 | 0.726718 |
Target: 5'- ---cCGCUGCAGCcGGG-UCCGCCg- -3' miRNA: 3'- cauuGCGACGUCGaCCUgAGGCGGgu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 110098 | 0.69 | 0.755078 |
Target: 5'- --cGCGCUGCGGUcaagcGGGCUCugacagCGCCCGu -3' miRNA: 3'- cauUGCGACGUCGa----CCUGAG------GCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 114309 | 0.69 | 0.755078 |
Target: 5'- aUAACGCcGCGGacCUGGGCUucugCCGCCUg -3' miRNA: 3'- cAUUGCGaCGUC--GACCUGA----GGCGGGu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 119179 | 0.69 | 0.773487 |
Target: 5'- -cGGCGC-GCAGCUGGAUcuggggCCGCUUg -3' miRNA: 3'- caUUGCGaCGUCGACCUGa-----GGCGGGu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 201859 | 0.68 | 0.782517 |
Target: 5'- -gGugGCUGUuuCUGGGCgucgugCUGCCCAg -3' miRNA: 3'- caUugCGACGucGACCUGa-----GGCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 236345 | 0.68 | 0.782517 |
Target: 5'- ----gGuCUGCucuGCUGGAUcgCCGCCCAg -3' miRNA: 3'- cauugC-GACGu--CGACCUGa-GGCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 142687 | 0.7 | 0.687865 |
Target: 5'- -cGGCgGCaGCAGCUaccacGGACUCCGCgCCGc -3' miRNA: 3'- caUUG-CGaCGUCGA-----CCUGAGGCG-GGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 105616 | 0.7 | 0.687865 |
Target: 5'- -aGGCGCUGCAGCaGGGCg-UGCUCGg -3' miRNA: 3'- caUUGCGACGUCGaCCUGagGCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 59355 | 0.71 | 0.652285 |
Target: 5'- --cACGCUGCAggcggcgcgccagccGCUGGACgCCGCgCAg -3' miRNA: 3'- cauUGCGACGU---------------CGACCUGaGGCGgGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 65517 | 0.74 | 0.455913 |
Target: 5'- -gAGCGCUGuCAGCUGGGCgacgCCGagaCCGu -3' miRNA: 3'- caUUGCGAC-GUCGACCUGa---GGCg--GGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 133646 | 0.74 | 0.455913 |
Target: 5'- -aAGCuGCUGCuGCUGGAC-CUGCCCc -3' miRNA: 3'- caUUG-CGACGuCGACCUGaGGCGGGu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 125407 | 0.73 | 0.50178 |
Target: 5'- uGUGcUGCUGCAGCgGGAUgaUCuCGCCCAc -3' miRNA: 3'- -CAUuGCGACGUCGaCCUG--AG-GCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 167768 | 0.72 | 0.566135 |
Target: 5'- cGUGGCGCUGguGUUGGAaccggugcuauuuuCUCCGUCa- -3' miRNA: 3'- -CAUUGCGACguCGACCU--------------GAGGCGGgu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 111401 | 0.72 | 0.578899 |
Target: 5'- --cGCGCUGCAGC-GG-CUCC-CCCAu -3' miRNA: 3'- cauUGCGACGUCGaCCuGAGGcGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 956 | 0.72 | 0.608563 |
Target: 5'- cGUGGucCGCUGCAGaggaaUGGGCuUCCGCgCCAc -3' miRNA: 3'- -CAUU--GCGACGUCg----ACCUG-AGGCG-GGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 166164 | 0.71 | 0.628432 |
Target: 5'- -aGGCGCUGCAGCagaggGGGgUUCaGCCCGu -3' miRNA: 3'- caUUGCGACGUCGa----CCUgAGG-CGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 137841 | 0.71 | 0.648312 |
Target: 5'- --cACGCcGCGGCUGGGCcgccCCGCCa- -3' miRNA: 3'- cauUGCGaCGUCGACCUGa---GGCGGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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