Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14349 | 3' | -54.5 | NC_003521.1 | + | 115054 | 0.67 | 0.97423 |
Target: 5'- uUUGGguccaCGUCGGAgaaGCCCGAcGUCg -3' miRNA: 3'- cGACCauua-GCAGCCU---CGGGCU-CAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 211400 | 0.67 | 0.97423 |
Target: 5'- cGCUGGUuguagcuGUCacCGGGGCCCGGacuGUCc -3' miRNA: 3'- -CGACCAu------UAGcaGCCUCGGGCU---CAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 98532 | 0.66 | 0.97573 |
Target: 5'- gGCUGGgccgcugcagCGgcggCGGgucccagcccgAGCCCGAGUCg -3' miRNA: 3'- -CGACCauua------GCa---GCC-----------UCGGGCUCAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 4219 | 0.66 | 0.976694 |
Target: 5'- gGCgGG-AAgggUGUCGGAGCcCCGAGgCUg -3' miRNA: 3'- -CGaCCaUUa--GCAGCCUCG-GGCUCaGA- -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 95072 | 0.66 | 0.976694 |
Target: 5'- cGCUcaGGUAGUCGcgcaGGGGCUCGGG-Cg -3' miRNA: 3'- -CGA--CCAUUAGCag--CCUCGGGCUCaGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 168755 | 0.66 | 0.976694 |
Target: 5'- cCUGGUGGUCcgccuccuGUCGGAaGCCgGAGa-- -3' miRNA: 3'- cGACCAUUAG--------CAGCCU-CGGgCUCaga -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 120988 | 0.66 | 0.978981 |
Target: 5'- aGCUcGUccUCGUCGGAGUCgGAGcCg -3' miRNA: 3'- -CGAcCAuuAGCAGCCUCGGgCUCaGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 76164 | 0.66 | 0.981097 |
Target: 5'- cGCaGGUAcagGUCGUCGcGGGCCUGcGUg- -3' miRNA: 3'- -CGaCCAU---UAGCAGC-CUCGGGCuCAga -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 124635 | 0.66 | 0.981097 |
Target: 5'- aGCaGGUAGUUGUCGaucaCCGGGUCg -3' miRNA: 3'- -CGaCCAUUAGCAGCcucgGGCUCAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 53597 | 0.66 | 0.981097 |
Target: 5'- uGCUGGUGGcCGaaGGGGagCGAGUCa -3' miRNA: 3'- -CGACCAUUaGCagCCUCggGCUCAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 198163 | 0.66 | 0.981097 |
Target: 5'- aCUGaGUcGUCGUUGGAGaaguCCCGGGUa- -3' miRNA: 3'- cGAC-CAuUAGCAGCCUC----GGGCUCAga -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 155450 | 0.66 | 0.98305 |
Target: 5'- cGCUGGgcgAGUCG-CaGcAGCCCGucgaGGUCUg -3' miRNA: 3'- -CGACCa--UUAGCaGcC-UCGGGC----UCAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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