miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14349 5' -56.3 NC_003521.1 + 124096 0.66 0.971922
Target:  5'- -aGGgcgCCG-ACUCCGGGacCGCCGUgGa -3'
miRNA:   3'- ggUCa--GGCuUGAGGCCCa-GUGGCAgU- -5'
14349 5' -56.3 NC_003521.1 + 21294 0.66 0.971922
Target:  5'- gCGGUCUG-GCUgCGcguggcGGUCAUCGUCAa -3'
miRNA:   3'- gGUCAGGCuUGAgGC------CCAGUGGCAGU- -5'
14349 5' -56.3 NC_003521.1 + 90045 0.66 0.971922
Target:  5'- aCGGccUCC-AGCUCCGGGaCGCCGa-- -3'
miRNA:   3'- gGUC--AGGcUUGAGGCCCaGUGGCagu -5'
14349 5' -56.3 NC_003521.1 + 98705 0.66 0.971922
Target:  5'- --cGUCCGccuccAGCUCCaGGUCGCaCGUUg -3'
miRNA:   3'- gguCAGGC-----UUGAGGcCCAGUG-GCAGu -5'
14349 5' -56.3 NC_003521.1 + 11541 0.66 0.970845
Target:  5'- gCCAGUCCuaucgcuacgcCUCCGG--CGCCGUCGu -3'
miRNA:   3'- -GGUCAGGcuu--------GAGGCCcaGUGGCAGU- -5'
14349 5' -56.3 NC_003521.1 + 222652 0.66 0.969172
Target:  5'- --cGUCUGugguUUCCGaagcGGUCACCGUCGu -3'
miRNA:   3'- gguCAGGCuu--GAGGC----CCAGUGGCAGU- -5'
14349 5' -56.3 NC_003521.1 + 221666 0.66 0.963107
Target:  5'- aCCAGcgCCGuGCUCUcGGUCACCa--- -3'
miRNA:   3'- -GGUCa-GGCuUGAGGcCCAGUGGcagu -5'
14349 5' -56.3 NC_003521.1 + 148888 0.66 0.963107
Target:  5'- -gGGUCCGccg-CCGGGUCcACCG-CAu -3'
miRNA:   3'- ggUCAGGCuugaGGCCCAG-UGGCaGU- -5'
14349 5' -56.3 NC_003521.1 + 84883 0.66 0.963107
Target:  5'- cCCGGUCCGggUggCGcGaGUagGCCGUCAg -3'
miRNA:   3'- -GGUCAGGCuuGagGC-C-CAg-UGGCAGU- -5'
14349 5' -56.3 NC_003521.1 + 164746 0.66 0.963107
Target:  5'- gCCAGUCC-AACcugCCGcacaUCGCCGUCAu -3'
miRNA:   3'- -GGUCAGGcUUGa--GGCcc--AGUGGCAGU- -5'
14349 5' -56.3 NC_003521.1 + 109734 0.66 0.962784
Target:  5'- cCCGccGUCCGGagcccgcGCgagCCGcGGUCGCCGcCAc -3'
miRNA:   3'- -GGU--CAGGCU-------UGa--GGC-CCAGUGGCaGU- -5'
14349 5' -56.3 NC_003521.1 + 81017 0.66 0.956256
Target:  5'- gCCGGUCCgugacGAACUCgGGaGUCGuucgcgacuCCGUCc -3'
miRNA:   3'- -GGUCAGG-----CUUGAGgCC-CAGU---------GGCAGu -5'
14349 5' -56.3 NC_003521.1 + 195554 0.66 0.955892
Target:  5'- cCCGGUCCauGAuCUCCaggaagcgcuuggGGGUCAggcCCGUCu -3'
miRNA:   3'- -GGUCAGG--CUuGAGG-------------CCCAGU---GGCAGu -5'
14349 5' -56.3 NC_003521.1 + 2235 0.67 0.940075
Target:  5'- gCUAGUgCUGGACgagCUGGGU-GCCGUCu -3'
miRNA:   3'- -GGUCA-GGCUUGa--GGCCCAgUGGCAGu -5'
14349 5' -56.3 NC_003521.1 + 202463 0.67 0.940075
Target:  5'- gCUAGUgCUGGACgagCUGGGU-GCCGUCu -3'
miRNA:   3'- -GGUCA-GGCUUGa--GGCCCAgUGGCAGu -5'
14349 5' -56.3 NC_003521.1 + 105074 0.67 0.935497
Target:  5'- uUCGGUCCcggGAACgUCCGGGUgguugCACgCGUCc -3'
miRNA:   3'- -GGUCAGG---CUUG-AGGCCCA-----GUG-GCAGu -5'
14349 5' -56.3 NC_003521.1 + 40778 0.68 0.930703
Target:  5'- gCCGGaagcucggcgacUCCGGACUCCcGG-CGCgGUCAg -3'
miRNA:   3'- -GGUC------------AGGCUUGAGGcCCaGUGgCAGU- -5'
14349 5' -56.3 NC_003521.1 + 3952 0.68 0.930703
Target:  5'- aCGGcguaUCCGAagaagcggaggAC-CCGGGgCACCGUCAg -3'
miRNA:   3'- gGUC----AGGCU-----------UGaGGCCCaGUGGCAGU- -5'
14349 5' -56.3 NC_003521.1 + 149448 0.68 0.929223
Target:  5'- -gGGUCCGGGC-CCgGGGUucggcccccuccccCACCGUCc -3'
miRNA:   3'- ggUCAGGCUUGaGG-CCCA--------------GUGGCAGu -5'
14349 5' -56.3 NC_003521.1 + 26799 0.68 0.920465
Target:  5'- aCCGGUCUaacgccacccuGAGCgCCGucguGUCACCGUCGg -3'
miRNA:   3'- -GGUCAGG-----------CUUGaGGCc---CAGUGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.