Results 1 - 20 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 3034 | 1.09 | 0.000634 |
Target: 5'- gUCGAACGAGCACCCGCUGACCCGACAg -3' miRNA: 3'- -AGCUUGCUCGUGGGCGACUGGGCUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 29536 | 0.74 | 0.205612 |
Target: 5'- gUCGAGCaGAGC-CgCGUUGACCUGGCGc -3' miRNA: 3'- -AGCUUG-CUCGuGgGCGACUGGGCUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 30015 | 0.74 | 0.216637 |
Target: 5'- uUCGAGCGAGUGCCCGa--ACCCGcCGg -3' miRNA: 3'- -AGCUUGCUCGUGGGCgacUGGGCuGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 50710 | 0.73 | 0.228163 |
Target: 5'- cUCGAggcaACGGGUACguccguauCCGCUGACuuGACAg -3' miRNA: 3'- -AGCU----UGCUCGUG--------GGCGACUGggCUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 38900 | 0.72 | 0.286552 |
Target: 5'- aCGGGCcaucGAGUACCUGCUGaACCCGcCGg -3' miRNA: 3'- aGCUUG----CUCGUGGGCGAC-UGGGCuGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 10968 | 0.71 | 0.301029 |
Target: 5'- cCGAguACGAGCcaaGCUCGCUGAgCgCGACAc -3' miRNA: 3'- aGCU--UGCUCG---UGGGCGACUgG-GCUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 5777 | 0.71 | 0.336445 |
Target: 5'- cUCGGcacucugccuggccGCGAGCACCUGCUcgacgcccuugguGACCUGAUc -3' miRNA: 3'- -AGCU--------------UGCUCGUGGGCGA-------------CUGGGCUGu -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 41286 | 0.7 | 0.364517 |
Target: 5'- uUCGAGCGAcCAUCCGCUGAggaUgGACAc -3' miRNA: 3'- -AGCUUGCUcGUGGGCGACUg--GgCUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 19548 | 0.7 | 0.371354 |
Target: 5'- cUCGAugaacucccacuCGAGCACCCGCUcGCCagCGACc -3' miRNA: 3'- -AGCUu-----------GCUCGUGGGCGAcUGG--GCUGu -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 39470 | 0.7 | 0.373076 |
Target: 5'- aCG-AUGAGCGCgaGCUGACCCcgcucGACAa -3' miRNA: 3'- aGCuUGCUCGUGggCGACUGGG-----CUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 17252 | 0.69 | 0.408652 |
Target: 5'- -gGAGCGAGCugcagcaccgcGCCUGC-GACCUGGCc -3' miRNA: 3'- agCUUGCUCG-----------UGGGCGaCUGGGCUGu -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 4931 | 0.69 | 0.417871 |
Target: 5'- aCGAugGAcCAcCCCGgUGGCCCGGuCAa -3' miRNA: 3'- aGCUugCUcGU-GGGCgACUGGGCU-GU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 40180 | 0.68 | 0.49587 |
Target: 5'- -aGAGCGcccAGCACCUGCUGGCgCaGugGg -3' miRNA: 3'- agCUUGC---UCGUGGGCGACUGgG-CugU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 22024 | 0.67 | 0.516404 |
Target: 5'- cUCGAA-GAGCACCUGCUGaagcuGCCUcuggaGGCGc -3' miRNA: 3'- -AGCUUgCUCGUGGGCGAC-----UGGG-----CUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 7576 | 0.67 | 0.526799 |
Target: 5'- aUCGAgaagcuccGCGAGgGCCUGCUcaucGCCCGAg- -3' miRNA: 3'- -AGCU--------UGCUCgUGGGCGAc---UGGGCUgu -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 46436 | 0.67 | 0.526799 |
Target: 5'- -gGAACGAGCugC-GCUGGCUCuGCGc -3' miRNA: 3'- agCUUGCUCGugGgCGACUGGGcUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 31775 | 0.66 | 0.565882 |
Target: 5'- aUCGGGCGuGGCgguacgucaucaagGCCCGCUGGCaCGAg- -3' miRNA: 3'- -AGCUUGC-UCG--------------UGGGCGACUGgGCUgu -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 5949 | 0.66 | 0.569087 |
Target: 5'- cCGAGCGGGUcggGCUgGcCUGugCCGugGa -3' miRNA: 3'- aGCUUGCUCG---UGGgC-GACugGGCugU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 43227 | 0.66 | 0.601349 |
Target: 5'- cCGGACucgaAGCucaCCGUUGACCaCGACGa -3' miRNA: 3'- aGCUUGc---UCGug-GGCGACUGG-GCUGU- -5' |
|||||||
1435 | 3' | -57.4 | NC_001335.1 | + | 18261 | 0.66 | 0.601349 |
Target: 5'- -aGAACGcGCuguccgucguuGgCCGCUGACuuGACAu -3' miRNA: 3'- agCUUGCuCG-----------UgGGCGACUGggCUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home