miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14350 3' -68.2 NC_003521.1 + 187837 0.65 0.537503
Target:  5'- uGGCgcgagaccucaUGAGCCUguGGCGCCucugcaugaaacacGAGGGCaGCg -3'
miRNA:   3'- gCCG-----------GCUCGGG--CCGCGG--------------CUCCCGgCG- -5'
14350 3' -68.2 NC_003521.1 + 161066 0.65 0.537503
Target:  5'- cCGGUCcucaccGGCCCGGCGCUGAuGucgguacgagugucGGCgGCg -3'
miRNA:   3'- -GCCGGc-----UCGGGCCGCGGCU-C--------------CCGgCG- -5'
14350 3' -68.2 NC_003521.1 + 75986 0.65 0.537503
Target:  5'- gCGGCCcucGCCgGGCGCCGucAGcacguagaagacucGGUCGCc -3'
miRNA:   3'- -GCCGGcu-CGGgCCGCGGC--UC--------------CCGGCG- -5'
14350 3' -68.2 NC_003521.1 + 4316 0.66 0.534858
Target:  5'- aCGGCCGggggcucgaccguccAuGCCUGGCGCCacc-GCCGCc -3'
miRNA:   3'- -GCCGGC---------------U-CGGGCCGCGGcuccCGGCG- -5'
14350 3' -68.2 NC_003521.1 + 90567 0.66 0.531338
Target:  5'- aGGCCG-GCCgCGGUGCa---GGCCGa -3'
miRNA:   3'- gCCGGCuCGG-GCCGCGgcucCCGGCg -5'
14350 3' -68.2 NC_003521.1 + 100438 0.66 0.531338
Target:  5'- gCGGCgGcGCUCGGgaGC--AGGGCCGCc -3'
miRNA:   3'- -GCCGgCuCGGGCCg-CGgcUCCCGGCG- -5'
14350 3' -68.2 NC_003521.1 + 138517 0.66 0.531338
Target:  5'- gGGCCcgcuGGGUCCGGCGCaccuCGAcuucuuGCCGCg -3'
miRNA:   3'- gCCGG----CUCGGGCCGCG----GCUcc----CGGCG- -5'
14350 3' -68.2 NC_003521.1 + 142306 0.66 0.531338
Target:  5'- gCGGCCcAGCCgCGcGCGUCGucgcaacuGGGUgCGCg -3'
miRNA:   3'- -GCCGGcUCGG-GC-CGCGGCu-------CCCG-GCG- -5'
14350 3' -68.2 NC_003521.1 + 140248 0.66 0.531338
Target:  5'- cCGGCCccuacGGCgguaagUCGGaCGCCGAGGGCgaGUa -3'
miRNA:   3'- -GCCGGc----UCG------GGCC-GCGGCUCCCGg-CG- -5'
14350 3' -68.2 NC_003521.1 + 95745 0.66 0.531338
Target:  5'- gCGGCUGAGCCacaGGUaGUCGuccGaGCCGCc -3'
miRNA:   3'- -GCCGGCUCGGg--CCG-CGGCuc-C-CGGCG- -5'
14350 3' -68.2 NC_003521.1 + 175915 0.66 0.531338
Target:  5'- -uGCUGGGgaCCUGGC-CCGAGGaGCCGg -3'
miRNA:   3'- gcCGGCUC--GGGCCGcGGCUCC-CGGCg -5'
14350 3' -68.2 NC_003521.1 + 95147 0.66 0.531338
Target:  5'- gCGGCCGcGCCgaCGGCaaggagucgGCCGGccGGGCC-Ca -3'
miRNA:   3'- -GCCGGCuCGG--GCCG---------CGGCU--CCCGGcG- -5'
14350 3' -68.2 NC_003521.1 + 155669 0.66 0.531338
Target:  5'- gCGGCgGAgGUCUGGacgauucaucgcCGCCGAGGgaggcuacguGCCGCc -3'
miRNA:   3'- -GCCGgCU-CGGGCC------------GCGGCUCC----------CGGCG- -5'
14350 3' -68.2 NC_003521.1 + 36584 0.66 0.531338
Target:  5'- -uGCgCGAacugGCCUGGCGgCGGGuGGCCGa -3'
miRNA:   3'- gcCG-GCU----CGGGCCGCgGCUC-CCGGCg -5'
14350 3' -68.2 NC_003521.1 + 196887 0.66 0.531338
Target:  5'- gCGGgUGAGgCCGGgGCgGAaggcGGGUCGUc -3'
miRNA:   3'- -GCCgGCUCgGGCCgCGgCU----CCCGGCG- -5'
14350 3' -68.2 NC_003521.1 + 172392 0.66 0.531338
Target:  5'- gCGGuuGAGg--GGCGCCGGcGGaGCCGUc -3'
miRNA:   3'- -GCCggCUCgggCCGCGGCU-CC-CGGCG- -5'
14350 3' -68.2 NC_003521.1 + 166211 0.66 0.530459
Target:  5'- -cGCUGuuGGCgCGGCGgCGAGgcgcgccGGCCGCg -3'
miRNA:   3'- gcCGGC--UCGgGCCGCgGCUC-------CCGGCG- -5'
14350 3' -68.2 NC_003521.1 + 217041 0.66 0.528704
Target:  5'- aGGCCGucacggccaacauaaAGCCCaGCGCCGugacguaguagcccaGGaacagucGGCCGCc -3'
miRNA:   3'- gCCGGC---------------UCGGGcCGCGGC---------------UC-------CCGGCG- -5'
14350 3' -68.2 NC_003521.1 + 166261 0.66 0.528704
Target:  5'- gGGCCGuGCUcacgggcacgcgcaCGGCGCgGcuGGuCCGCg -3'
miRNA:   3'- gCCGGCuCGG--------------GCCGCGgCucCC-GGCG- -5'
14350 3' -68.2 NC_003521.1 + 24406 0.66 0.527827
Target:  5'- gGGCCcgcgGAGCauagaaagccagaCGGCGCa-GGGGCCGg -3'
miRNA:   3'- gCCGG----CUCGg------------GCCGCGgcUCCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.