miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14350 5' -56.3 NC_003521.1 + 147776 0.66 0.954754
Target:  5'- -gGaCGGGagCGGgGUucuuuuuuGAGGGUGCGGCUa -3'
miRNA:   3'- aaC-GCCUa-GCCgCG--------UUUCCAUGCCGG- -5'
14350 5' -56.3 NC_003521.1 + 218627 0.66 0.954754
Target:  5'- -aGCGcg-CGGCGguAAGcGgccACGGCCg -3'
miRNA:   3'- aaCGCcuaGCCGCguUUC-Ca--UGCCGG- -5'
14350 5' -56.3 NC_003521.1 + 168927 0.66 0.954754
Target:  5'- aUGCGaGGagGGCGC--AGGcAgGGCCg -3'
miRNA:   3'- aACGC-CUagCCGCGuuUCCaUgCCGG- -5'
14350 5' -56.3 NC_003521.1 + 100698 0.66 0.954754
Target:  5'- aUGCGGA--GGCGCcgcc--GCGGCCg -3'
miRNA:   3'- aACGCCUagCCGCGuuuccaUGCCGG- -5'
14350 5' -56.3 NC_003521.1 + 74182 0.66 0.954754
Target:  5'- cUGCGccgCGGCGCccGGcGcGCGGCCc -3'
miRNA:   3'- aACGCcuaGCCGCGuuUC-CaUGCCGG- -5'
14350 5' -56.3 NC_003521.1 + 118666 0.66 0.954754
Target:  5'- aUGCgGGGUCGGCuucgggagGCGgcGGUACcGCUg -3'
miRNA:   3'- aACG-CCUAGCCG--------CGUuuCCAUGcCGG- -5'
14350 5' -56.3 NC_003521.1 + 122656 0.66 0.954754
Target:  5'- -gGCGGGcgucgucugCGGCGguGGGGUgGCGucGCCg -3'
miRNA:   3'- aaCGCCUa--------GCCGCguUUCCA-UGC--CGG- -5'
14350 5' -56.3 NC_003521.1 + 35811 0.66 0.954754
Target:  5'- -gGCGGcgUGG-GCGAGaaccuggcGGUGCGcGCCg -3'
miRNA:   3'- aaCGCCuaGCCgCGUUU--------CCAUGC-CGG- -5'
14350 5' -56.3 NC_003521.1 + 172336 0.66 0.950847
Target:  5'- -gGCGGA-CGG-GUGAGGG-GCGGCg -3'
miRNA:   3'- aaCGCCUaGCCgCGUUUCCaUGCCGg -5'
14350 5' -56.3 NC_003521.1 + 166155 0.66 0.950847
Target:  5'- cUUGCGGuagagCGaGCGCAGGGccgaGCGGCg -3'
miRNA:   3'- -AACGCCua---GC-CGCGUUUCca--UGCCGg -5'
14350 5' -56.3 NC_003521.1 + 112765 0.66 0.950847
Target:  5'- -gGCGGcAUCGGCGgCGc--GU-CGGCCa -3'
miRNA:   3'- aaCGCC-UAGCCGC-GUuucCAuGCCGG- -5'
14350 5' -56.3 NC_003521.1 + 90823 0.66 0.950847
Target:  5'- -gGUGGcGUCGucGUGCGGcGGGUGCGcGCCg -3'
miRNA:   3'- aaCGCC-UAGC--CGCGUU-UCCAUGC-CGG- -5'
14350 5' -56.3 NC_003521.1 + 106289 0.66 0.950847
Target:  5'- -cGUGGAg-GGCaacaGCAAccAGGcgGCGGCCg -3'
miRNA:   3'- aaCGCCUagCCG----CGUU--UCCa-UGCCGG- -5'
14350 5' -56.3 NC_003521.1 + 216731 0.66 0.950847
Target:  5'- --cCGGAUUGGCGgAGAGGggaugaGGCg -3'
miRNA:   3'- aacGCCUAGCCGCgUUUCCaug---CCGg -5'
14350 5' -56.3 NC_003521.1 + 216821 0.66 0.950847
Target:  5'- -cGcCGGAU-GGCGCGcagGAGGUcgcagcccGCGGCg -3'
miRNA:   3'- aaC-GCCUAgCCGCGU---UUCCA--------UGCCGg -5'
14350 5' -56.3 NC_003521.1 + 222006 0.66 0.950847
Target:  5'- gUGCGGcGUgGGCGgGAAGcacuUGGCCa -3'
miRNA:   3'- aACGCC-UAgCCGCgUUUCcau-GCCGG- -5'
14350 5' -56.3 NC_003521.1 + 213719 0.66 0.950847
Target:  5'- -cGgGGAUgcccagccagaCGGCGCcgcaGAAGGccguggugGCGGCCa -3'
miRNA:   3'- aaCgCCUA-----------GCCGCG----UUUCCa-------UGCCGG- -5'
14350 5' -56.3 NC_003521.1 + 124422 0.66 0.950847
Target:  5'- -cGCGaGAUcuccucgucCGGCGagacguGGUugGGCCg -3'
miRNA:   3'- aaCGC-CUA---------GCCGCguuu--CCAugCCGG- -5'
14350 5' -56.3 NC_003521.1 + 129014 0.66 0.950847
Target:  5'- cUGUGGAUCaGGcCGCGcuccauGGcguCGGCCg -3'
miRNA:   3'- aACGCCUAG-CC-GCGUuu----CCau-GCCGG- -5'
14350 5' -56.3 NC_003521.1 + 109018 0.66 0.950847
Target:  5'- -aGUGGGUCcGCgGCGAGGGUACcaCCa -3'
miRNA:   3'- aaCGCCUAGcCG-CGUUUCCAUGccGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.