Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1436 | 3' | -57.4 | NC_001335.1 | + | 32906 | 0.66 | 0.619194 |
Target: 5'- cGGCCUCGGCugcuguGCgCgACUCGAUggCGGu -3' miRNA: 3'- -CUGGAGCCGu-----UG-GgUGAGCUGgaGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 38265 | 0.66 | 0.575976 |
Target: 5'- aGACCgaacCGGCuuaguUCCGCUCGGCCggccagcccgCGAc -3' miRNA: 3'- -CUGGa---GCCGuu---GGGUGAGCUGGa---------GCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 37188 | 0.66 | 0.586733 |
Target: 5'- -cCCUUGGgAuaCCGCUCGuCCUCGGg -3' miRNA: 3'- cuGGAGCCgUugGGUGAGCuGGAGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 46852 | 0.66 | 0.585656 |
Target: 5'- cGACCUgGGCcaucuccAGCCCguACUUGGCCaucagcUCGAa -3' miRNA: 3'- -CUGGAgCCG-------UUGGG--UGAGCUGG------AGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 32006 | 0.66 | 0.574902 |
Target: 5'- --gCUCGGUcagcaccGACCUGCU-GGCCUCGAu -3' miRNA: 3'- cugGAGCCG-------UUGGGUGAgCUGGAGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 46468 | 0.66 | 0.619195 |
Target: 5'- cGGCCUgGGCGaaGCCUGCgauccaCGACCggCGGu -3' miRNA: 3'- -CUGGAgCCGU--UGGGUGa-----GCUGGa-GCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 22904 | 0.66 | 0.608351 |
Target: 5'- cGACCgUCGGCAucACCgACggCGugUUCGu -3' miRNA: 3'- -CUGG-AGCCGU--UGGgUGa-GCugGAGCu -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 8788 | 0.66 | 0.575975 |
Target: 5'- aGCgUCGGUguAGCCCAgUgGuGCCUCGAu -3' miRNA: 3'- cUGgAGCCG--UUGGGUgAgC-UGGAGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 3116 | 0.66 | 0.597528 |
Target: 5'- cGCCUgucgggucagCGGguGCUCGUUCGACUUCGAg -3' miRNA: 3'- cUGGA----------GCCguUGGGUGAGCUGGAGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 15995 | 0.66 | 0.608351 |
Target: 5'- cGGCCUUGGCcugGGCCgCAUcgagaugaccgUUGAUCUCGAc -3' miRNA: 3'- -CUGGAGCCG---UUGG-GUG-----------AGCUGGAGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 37856 | 0.66 | 0.618109 |
Target: 5'- gGGCgUUCGGCAGCgucuucgCCAC-CGACCgggCGAa -3' miRNA: 3'- -CUG-GAGCCGUUG-------GGUGaGCUGGa--GCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 9176 | 0.67 | 0.53347 |
Target: 5'- uGAUCuUCGGCAucaaGCCCGaagagaUCGGCgUCGAc -3' miRNA: 3'- -CUGG-AGCCGU----UGGGUg-----AGCUGgAGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 2868 | 0.67 | 0.53347 |
Target: 5'- cGACCgacUGGCAgaugGCCCgACUCGcCCUCu- -3' miRNA: 3'- -CUGGa--GCCGU----UGGG-UGAGCuGGAGcu -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 14364 | 0.67 | 0.502336 |
Target: 5'- cGACCUCaGCaAGCCCGa--GACCUgGAc -3' miRNA: 3'- -CUGGAGcCG-UUGGGUgagCUGGAgCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 20498 | 0.67 | 0.544003 |
Target: 5'- cAUCggUGGCGACCUGCU-GACCUCGu -3' miRNA: 3'- cUGGa-GCCGUUGGGUGAgCUGGAGCu -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 34461 | 0.67 | 0.544003 |
Target: 5'- cGACCagcgCaGCAGCCCAgcccuCUCGugaguCCUCGAu -3' miRNA: 3'- -CUGGa---GcCGUUGGGU-----GAGCu----GGAGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 32237 | 0.68 | 0.471029 |
Target: 5'- cGACCUCGaauccgaugucccGCAACgCACccggaUCGAUCUCGGu -3' miRNA: 3'- -CUGGAGC-------------CGUUGgGUG-----AGCUGGAGCU- -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 2403 | 0.68 | 0.482028 |
Target: 5'- cGGCCUagcCGGCccAGCUCACUccuugcCGACCUCGc -3' miRNA: 3'- -CUGGA---GCCG--UUGGGUGA------GCUGGAGCu -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 33338 | 0.68 | 0.459177 |
Target: 5'- cACCUCGGUguucggagcgaagaGAUCCuuCUCGAUCUCGu -3' miRNA: 3'- cUGGAGCCG--------------UUGGGu-GAGCUGGAGCu -5' |
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1436 | 3' | -57.4 | NC_001335.1 | + | 27302 | 0.68 | 0.472023 |
Target: 5'- uGGCCUCGGCGcGgUCACg-GGCCUCGu -3' miRNA: 3'- -CUGGAGCCGU-UgGGUGagCUGGAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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