Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 160328 | 0.67 | 0.812081 |
Target: 5'- -aGCC-GUGGG-C-GGCgCGGUGGCCUc -3' miRNA: 3'- gaUGGaCGCCCaGuUCG-GCCACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 145084 | 0.67 | 0.820258 |
Target: 5'- aCUACCUGUGGcUCAGccgccuGCUGGaccUGGCgCCu -3' miRNA: 3'- -GAUGGACGCCcAGUU------CGGCC---ACCG-GG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 46448 | 0.67 | 0.795298 |
Target: 5'- -gGgCUGCGGG---GGCUGGUcGGCCUc -3' miRNA: 3'- gaUgGACGCCCaguUCGGCCA-CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 100141 | 0.67 | 0.786706 |
Target: 5'- --uCCUGCGGGa-AGGCCGuGgGGCUCu -3' miRNA: 3'- gauGGACGCCCagUUCGGC-CaCCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 124191 | 0.67 | 0.777112 |
Target: 5'- cCUGCCgGCuGGGggUGAGCgGGcccuuucUGGCCCg -3' miRNA: 3'- -GAUGGaCG-CCCa-GUUCGgCC-------ACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 239767 | 0.68 | 0.760217 |
Target: 5'- -----aGCuGGcgCAGGUCGGUGGCCCc -3' miRNA: 3'- gauggaCGcCCa-GUUCGGCCACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 155492 | 0.68 | 0.732819 |
Target: 5'- -gGCCUGCGG--CGGGCCGcG-GGCCa -3' miRNA: 3'- gaUGGACGCCcaGUUCGGC-CaCCGGg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 38235 | 0.68 | 0.760217 |
Target: 5'- -gGCCUcgGCGGG-CGGGgCGGagacgcGGCCCa -3' miRNA: 3'- gaUGGA--CGCCCaGUUCgGCCa-----CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 56427 | 0.68 | 0.760217 |
Target: 5'- gUACUcGC-GGUCGaaGGCCGccucGUGGCCCa -3' miRNA: 3'- gAUGGaCGcCCAGU--UCGGC----CACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 40891 | 0.68 | 0.772705 |
Target: 5'- -gACCgggGCGGGggucaguuuaauagCGAGgCGGgggcGGCCCg -3' miRNA: 3'- gaUGGa--CGCCCa-------------GUUCgGCCa---CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 39540 | 0.68 | 0.760217 |
Target: 5'- -----aGCuGGcgCAGGUCGGUGGCCCc -3' miRNA: 3'- gauggaCGcCCa-GUUCGGCCACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 149423 | 0.68 | 0.750265 |
Target: 5'- --cCCUGUGGGccgggauUUggGUCGGggguccgGGCCCg -3' miRNA: 3'- gauGGACGCCC-------AGuuCGGCCa------CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 99901 | 0.68 | 0.760217 |
Target: 5'- --uCgUGCGGGUUGA-CCGGUaGCCCg -3' miRNA: 3'- gauGgACGCCCAGUUcGGCCAcCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 168736 | 0.68 | 0.751175 |
Target: 5'- uUAUCgGC-GGUCAgcacGGCCuGGUGGUCCg -3' miRNA: 3'- gAUGGaCGcCCAGU----UCGG-CCACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 113324 | 0.68 | 0.751175 |
Target: 5'- -gACCUGCuGGGcCAAgacGCCGGggGGCUUc -3' miRNA: 3'- gaUGGACG-CCCaGUU---CGGCCa-CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 168157 | 0.68 | 0.731892 |
Target: 5'- -gGCCUGCGGcguaugcggcauaGUCugcgugauGAGCUGcUGGCCCg -3' miRNA: 3'- gaUGGACGCC-------------CAG--------UUCGGCcACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 238463 | 0.68 | 0.760217 |
Target: 5'- -gGCCUcgGCGGG-CGGGgCGGagacgcGGCCCa -3' miRNA: 3'- gaUGGA--CGCCCaGUUCgGCCa-----CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 66765 | 0.68 | 0.769158 |
Target: 5'- --uCCcGCGGGUgAuGCCGccGGCCCa -3' miRNA: 3'- gauGGaCGCCCAgUuCGGCcaCCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 29119 | 0.68 | 0.760217 |
Target: 5'- -cGCCacgGCGG--CAAGCUGGaGGCCCu -3' miRNA: 3'- gaUGGa--CGCCcaGUUCGGCCaCCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 112979 | 0.69 | 0.695234 |
Target: 5'- cCUGCCcGaCGGG-CuggcGCCGG-GGCCCu -3' miRNA: 3'- -GAUGGaC-GCCCaGuu--CGGCCaCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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