Results 81 - 100 of 100 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 233479 | 0.72 | 0.504758 |
Target: 5'- -gACCUGUGGuGUUGAGCCGcGaGGCCa -3' miRNA: 3'- gaUGGACGCC-CAGUUCGGC-CaCCGGg -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 156174 | 0.72 | 0.495655 |
Target: 5'- -cGCCUGUGcGGcaUCucGCCGGUGGCgCg -3' miRNA: 3'- gaUGGACGC-CC--AGuuCGGCCACCGgG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 77956 | 0.73 | 0.460026 |
Target: 5'- --cCCUGCuGGGUCuugGAGCCGGccgcgGGCUCg -3' miRNA: 3'- gauGGACG-CCCAG---UUCGGCCa----CCGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 210013 | 0.73 | 0.451331 |
Target: 5'- -----cGCGGGUUucGCCGGcgGGCCCu -3' miRNA: 3'- gauggaCGCCCAGuuCGGCCa-CCGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 88780 | 0.75 | 0.385232 |
Target: 5'- -gACCUGCGGGUgAAGCaccgcugcggccUGGUGaaGCCCg -3' miRNA: 3'- gaUGGACGCCCAgUUCG------------GCCAC--CGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 187617 | 0.75 | 0.369736 |
Target: 5'- -gGCCUGcCGGG-CGAGCCGGgccgcgcgccgcUGGCCa -3' miRNA: 3'- gaUGGAC-GCCCaGUUCGGCC------------ACCGGg -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 179985 | 0.7 | 0.627929 |
Target: 5'- -cACCUGCGGG--AAGuCCuGGUGGCUa -3' miRNA: 3'- gaUGGACGCCCagUUC-GG-CCACCGGg -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 181199 | 0.7 | 0.627929 |
Target: 5'- -cGCCUGCGagccgcGGUCGccGCCGG-GGCCg -3' miRNA: 3'- gaUGGACGC------CCAGUu-CGGCCaCCGGg -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 39540 | 0.68 | 0.760217 |
Target: 5'- -----aGCuGGcgCAGGUCGGUGGCCCc -3' miRNA: 3'- gauggaCGcCCa-GUUCGGCCACCGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 149423 | 0.68 | 0.750265 |
Target: 5'- --cCCUGUGGGccgggauUUggGUCGGggguccgGGCCCg -3' miRNA: 3'- gauGGACGCCC-------AGuuCGGCCa------CCGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 155492 | 0.68 | 0.732819 |
Target: 5'- -gGCCUGCGG--CGGGCCGcG-GGCCa -3' miRNA: 3'- gaUGGACGCCcaGUUCGGC-CaCCGGg -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 123453 | 0.69 | 0.714151 |
Target: 5'- -cGCCguaGCGGGgaccgCGGGuuGGcgacUGGCCCc -3' miRNA: 3'- gaUGGa--CGCCCa----GUUCggCC----ACCGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 207149 | 0.69 | 0.70472 |
Target: 5'- uUACgUGCGGGcCAcGGCCGGUcGCUg -3' miRNA: 3'- gAUGgACGCCCaGU-UCGGCCAcCGGg -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 39216 | 0.69 | 0.70472 |
Target: 5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3' miRNA: 3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 186905 | 0.69 | 0.70472 |
Target: 5'- gCUACCUGacguccaaGGGgggcGCCGGUGGCg- -3' miRNA: 3'- -GAUGGACg-------CCCaguuCGGCCACCGgg -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 112979 | 0.69 | 0.695234 |
Target: 5'- cCUGCCcGaCGGG-CuggcGCCGG-GGCCCu -3' miRNA: 3'- -GAUGGaC-GCCCaGuu--CGGCCaCCGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 139313 | 0.69 | 0.685701 |
Target: 5'- -cGCCUGCuGGUC-GGCCGcGUcuGGCCg -3' miRNA: 3'- gaUGGACGcCCAGuUCGGC-CA--CCGGg -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 13868 | 0.69 | 0.679962 |
Target: 5'- --cUCUGCGGGcggcgccgccauggaUUucGCCGGggGGCCCg -3' miRNA: 3'- gauGGACGCCC---------------AGuuCGGCCa-CCGGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 113687 | 0.7 | 0.646283 |
Target: 5'- -cGCCUGCGGGcugggacucaaccUCAAgacgcuGCUGGUGGaCCUc -3' miRNA: 3'- gaUGGACGCCC-------------AGUU------CGGCCACC-GGG- -5' |
|||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 195577 | 0.76 | 0.332897 |
Target: 5'- -cGCUUGgGGGUCAGGCCcgucugccgGGcGGCCCu -3' miRNA: 3'- gaUGGACgCCCAGUUCGG---------CCaCCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home