miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 139313 0.69 0.685701
Target:  5'- -cGCCUGCuGGUC-GGCCGcGUcuGGCCg -3'
miRNA:   3'- gaUGGACGcCCAGuUCGGC-CA--CCGGg -5'
14360 5' -59.9 NC_003521.1 + 112676 0.66 0.836148
Target:  5'- cCUGCCUGCaGGccuucgcCGAGCgCGGgccGCCCu -3'
miRNA:   3'- -GAUGGACGcCCa------GUUCG-GCCac-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 13868 0.69 0.679962
Target:  5'- --cUCUGCGGGcggcgccgccauggaUUucGCCGGggGGCCCg -3'
miRNA:   3'- gauGGACGCCC---------------AGuuCGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 123453 0.69 0.714151
Target:  5'- -cGCCguaGCGGGgaccgCGGGuuGGcgacUGGCCCc -3'
miRNA:   3'- gaUGGa--CGCCCa----GUUCggCC----ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 29119 0.68 0.760217
Target:  5'- -cGCCacgGCGG--CAAGCUGGaGGCCCu -3'
miRNA:   3'- gaUGGa--CGCCcaGUUCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 195346 0.66 0.865897
Target:  5'- gCUGCCguggugGUGGGcCGGGUgaaGGUGacGCCCg -3'
miRNA:   3'- -GAUGGa-----CGCCCaGUUCGg--CCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 1959 0.66 0.858728
Target:  5'- -gACCcGCGGGaCAcccAGCCGGcGcGCCUc -3'
miRNA:   3'- gaUGGaCGCCCaGU---UCGGCCaC-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 45729 0.66 0.828282
Target:  5'- uCUGCgggacGCGGGUCAGGCCGGguuuuguaGCgCg -3'
miRNA:   3'- -GAUGga---CGCCCAGUUCGGCCac------CGgG- -5'
14360 5' -59.9 NC_003521.1 + 97214 0.67 0.820258
Target:  5'- gUGCa-GCaGG-CAgcAGCCGGUGGCCg -3'
miRNA:   3'- gAUGgaCGcCCaGU--UCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 122509 0.67 0.812081
Target:  5'- -gGCCaacgcggcgGCGGG-CAGGCCGGcGGCg- -3'
miRNA:   3'- gaUGGa--------CGCCCaGUUCGGCCaCCGgg -5'
14360 5' -59.9 NC_003521.1 + 213750 0.67 0.80877
Target:  5'- aCUGCCUGCgcuaccuGGGcUCGucGCUGGUgaaacgcuacuuucGGCCCc -3'
miRNA:   3'- -GAUGGACG-------CCC-AGUu-CGGCCA--------------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 88082 0.67 0.786706
Target:  5'- gCUGCCcGUGGaggaCAaccGGCUGGUGGCCa -3'
miRNA:   3'- -GAUGGaCGCCca--GU---UCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 137518 0.66 0.858728
Target:  5'- -cGCCUGCuGGaGUaccGGCgcgUGGUGGCCUa -3'
miRNA:   3'- gaUGGACG-CC-CAgu-UCG---GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 40891 0.68 0.772705
Target:  5'- -gACCgggGCGGGggucaguuuaauagCGAGgCGGgggcGGCCCg -3'
miRNA:   3'- gaUGGa--CGCCCa-------------GUUCgGCCa---CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 66765 0.68 0.769158
Target:  5'- --uCCcGCGGGUgAuGCCGccGGCCCa -3'
miRNA:   3'- gauGGaCGCCCAgUuCGGCcaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 124191 0.67 0.777112
Target:  5'- cCUGCCgGCuGGGggUGAGCgGGcccuuucUGGCCCg -3'
miRNA:   3'- -GAUGGaCG-CCCa-GUUCGgCC-------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 153076 0.72 0.495655
Target:  5'- -cGCC-GcCGGGgccCGGGCCGG-GGCCCa -3'
miRNA:   3'- gaUGGaC-GCCCa--GUUCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 46448 0.67 0.795298
Target:  5'- -gGgCUGCGGG---GGCUGGUcGGCCUc -3'
miRNA:   3'- gaUgGACGCCCaguUCGGCCA-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 180855 0.7 0.647248
Target:  5'- -aGCC-GCGGGUCAGGCgGGcguugUGGCg- -3'
miRNA:   3'- gaUGGaCGCCCAGUUCGgCC-----ACCGgg -5'
14360 5' -59.9 NC_003521.1 + 100227 0.7 0.656895
Target:  5'- -gGCCgGCGaGGUgGAGCUGGgcgagGuGCCCg -3'
miRNA:   3'- gaUGGaCGC-CCAgUUCGGCCa----C-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.