miRNA display CGI


Results 81 - 100 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 204125 0.66 0.828282
Target:  5'- -cACCUGCucGGGcCAGgcGCCGGa-GCCCg -3'
miRNA:   3'- gaUGGACG--CCCaGUU--CGGCCacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 67664 0.66 0.836148
Target:  5'- aCUGCCUGUGGcUgGAGCUGaa-GCCCa -3'
miRNA:   3'- -GAUGGACGCCcAgUUCGGCcacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 145361 0.66 0.858001
Target:  5'- gUGCCacgugaUGCacGGGcgCGAGCCGGUgcgcgacGGCCUg -3'
miRNA:   3'- gAUGG------ACG--CCCa-GUUCGGCCA-------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 125831 0.66 0.858728
Target:  5'- --gUCUGCGcGUCGGGCucgCGGUGGUCg -3'
miRNA:   3'- gauGGACGCcCAGUUCG---GCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 202186 0.66 0.858728
Target:  5'- -gACCcGCGGGaCAcccAGCCGGcGcGCCUc -3'
miRNA:   3'- gaUGGaCGCCCaGU---UCGGCCaC-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 29071 0.66 0.865897
Target:  5'- -gGCCUuccugGUGGGcaUCGAGCUcauGGUGGCgCa -3'
miRNA:   3'- gaUGGA-----CGCCC--AGUUCGG---CCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 88717 0.66 0.865897
Target:  5'- gUACUUGagaCGGGUCuccucgcaGAGCCGGcgcacgucgccgUGGUCCu -3'
miRNA:   3'- gAUGGAC---GCCCAG--------UUCGGCC------------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 95154 0.67 0.820258
Target:  5'- -cGCCgacgGCaaGGaGUC-GGCCGGccgGGCCCa -3'
miRNA:   3'- gaUGGa---CG--CC-CAGuUCGGCCa--CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 82746 0.67 0.820258
Target:  5'- -cGCUUGCGGGaCGAGaucacgcgcgaCCGGcgGGCCg -3'
miRNA:   3'- gaUGGACGCCCaGUUC-----------GGCCa-CCGGg -5'
14360 5' -59.9 NC_003521.1 + 239767 0.68 0.760217
Target:  5'- -----aGCuGGcgCAGGUCGGUGGCCCc -3'
miRNA:   3'- gauggaCGcCCa-GUUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 238463 0.68 0.760217
Target:  5'- -gGCCUcgGCGGG-CGGGgCGGagacgcGGCCCa -3'
miRNA:   3'- gaUGGA--CGCCCaGUUCgGCCa-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 66765 0.68 0.769158
Target:  5'- --uCCcGCGGGUgAuGCCGccGGCCCa -3'
miRNA:   3'- gauGGaCGCCCAgUuCGGCcaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 40891 0.68 0.772705
Target:  5'- -gACCgggGCGGGggucaguuuaauagCGAGgCGGgggcGGCCCg -3'
miRNA:   3'- gaUGGa--CGCCCa-------------GUUCgGCCa---CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 124191 0.67 0.777112
Target:  5'- cCUGCCgGCuGGGggUGAGCgGGcccuuucUGGCCCg -3'
miRNA:   3'- -GAUGGaCG-CCCa-GUUCGgCC-------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 100141 0.67 0.786706
Target:  5'- --uCCUGCGGGa-AGGCCGuGgGGCUCu -3'
miRNA:   3'- gauGGACGCCCagUUCGGC-CaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 46448 0.67 0.795298
Target:  5'- -gGgCUGCGGG---GGCUGGUcGGCCUc -3'
miRNA:   3'- gaUgGACGCCCaguUCGGCCA-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 166087 0.67 0.810428
Target:  5'- -gGCCauaGCGGGagCGGGCCGGcagguucacgcgGGCCUg -3'
miRNA:   3'- gaUGGa--CGCCCa-GUUCGGCCa-----------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 74509 0.67 0.812081
Target:  5'- gCUGCUggagcagaGCGGcaUCAAGCUGGUGgaGCCCu -3'
miRNA:   3'- -GAUGGa-------CGCCc-AGUUCGGCCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 43821 0.67 0.820258
Target:  5'- -aGCagcCGGGUCAGccgccGCCGGccgcgGGCCCg -3'
miRNA:   3'- gaUGgacGCCCAGUU-----CGGCCa----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 150481 0.66 0.865897
Target:  5'- -cGCCUgGUGGGgcccuUCAGcuuuuacggcGCCGGcggGGCCCu -3'
miRNA:   3'- gaUGGA-CGCCC-----AGUU----------CGGCCa--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.