miRNA display CGI


Results 1 - 20 of 356 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14365 3' -56.2 NC_003521.1 + 74585 0.66 0.9645
Target:  5'- aGCgGCGGCgcggcgucccgcGGCCg---GCGCGccUCGCCg -3'
miRNA:   3'- -UGgUGCCG------------UCGGaagaUGUGC--AGCGG- -5'
14365 3' -56.2 NC_003521.1 + 240158 0.66 0.9645
Target:  5'- gGCuCAUGGCgucGGCCUgagcgUACGUUGCCu -3'
miRNA:   3'- -UG-GUGCCG---UCGGAagau-GUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 118077 0.66 0.9645
Target:  5'- uGCC-CGGUgucAGCCacUCggcgGCGcCGUCGCCc -3'
miRNA:   3'- -UGGuGCCG---UCGGa-AGa---UGU-GCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 14763 0.66 0.9645
Target:  5'- gGCCGgGGCGcGCCUUCguggccgaggUGCugGUgcUGCUg -3'
miRNA:   3'- -UGGUgCCGU-CGGAAG----------AUGugCA--GCGG- -5'
14365 3' -56.2 NC_003521.1 + 39930 0.66 0.9645
Target:  5'- gGCuCAUGGCgucGGCCUgagcgUACGUUGCCu -3'
miRNA:   3'- -UG-GUGCCG---UCGGAagau-GUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 183795 0.66 0.9645
Target:  5'- uGCCugGGCGGCgUguUCaucCGCGUgGCg -3'
miRNA:   3'- -UGGugCCGUCGgA--AGau-GUGCAgCGg -5'
14365 3' -56.2 NC_003521.1 + 166128 0.66 0.9645
Target:  5'- uUCAgGGCGGCCg---GCAgGUCGgCg -3'
miRNA:   3'- uGGUgCCGUCGGaagaUGUgCAGCgG- -5'
14365 3' -56.2 NC_003521.1 + 78242 0.66 0.9645
Target:  5'- uGCCACcGCAGCCggcagagcgCUgaaGCcCGUCGCa -3'
miRNA:   3'- -UGGUGcCGUCGGaa-------GA---UGuGCAGCGg -5'
14365 3' -56.2 NC_003521.1 + 39273 0.66 0.9645
Target:  5'- gACCGauaCAGCCgcgc-CACGUCGCCg -3'
miRNA:   3'- -UGGUgccGUCGGaagauGUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 18218 0.66 0.96418
Target:  5'- gGCCGCGGaguuCCgcgagCUGCGCGUuuucaucCGCCa -3'
miRNA:   3'- -UGGUGCCguc-GGaa---GAUGUGCA-------GCGG- -5'
14365 3' -56.2 NC_003521.1 + 210261 0.66 0.96418
Target:  5'- -gCGCGGacgGGCCUUCUguggccgGCGCGUCcguaccguGCCc -3'
miRNA:   3'- ugGUGCCg--UCGGAAGA-------UGUGCAG--------CGG- -5'
14365 3' -56.2 NC_003521.1 + 22279 0.66 0.96418
Target:  5'- uACCACGGCcucGCCUggcagcucucCUGCACcuucacgGUCuGCCu -3'
miRNA:   3'- -UGGUGCCGu--CGGAa---------GAUGUG-------CAG-CGG- -5'
14365 3' -56.2 NC_003521.1 + 235489 0.66 0.963208
Target:  5'- uACCACuaucgccggagucGCGGCCggCgggGCACGcCGCCc -3'
miRNA:   3'- -UGGUGc------------CGUCGGaaGa--UGUGCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 56513 0.66 0.96255
Target:  5'- gGCCGCGGUAGCgUUUcaucagcaggcuagGCACGUUGa- -3'
miRNA:   3'- -UGGUGCCGUCGgAAGa-------------UGUGCAGCgg -5'
14365 3' -56.2 NC_003521.1 + 213585 0.66 0.96255
Target:  5'- cGCCACGuaGCAGCCggCgaugACcaggcuguuggggugGCGgUCGCCg -3'
miRNA:   3'- -UGGUGC--CGUCGGaaGa---UG---------------UGC-AGCGG- -5'
14365 3' -56.2 NC_003521.1 + 118711 0.66 0.961547
Target:  5'- aGCCGCGGCGagacGCCg-CUGCAgccgcacgagaccaaGUCGCUg -3'
miRNA:   3'- -UGGUGCCGU----CGGaaGAUGUg--------------CAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 127399 0.66 0.961209
Target:  5'- gGCCACaGGCGGUggUCgugcaGCGCGUucacguaggcCGCCa -3'
miRNA:   3'- -UGGUG-CCGUCGgaAGa----UGUGCA----------GCGG- -5'
14365 3' -56.2 NC_003521.1 + 195108 0.66 0.961209
Target:  5'- gUCGCGGgGGUCcUCgucauCGUCGCCg -3'
miRNA:   3'- uGGUGCCgUCGGaAGaugu-GCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 44072 0.66 0.961209
Target:  5'- gGCCGgGGCAGCagacggUGCAgG-CGCCg -3'
miRNA:   3'- -UGGUgCCGUCGgaag--AUGUgCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 40518 0.66 0.961209
Target:  5'- uCCGacCGGcCGGCCcgCcGCACGcCGCCg -3'
miRNA:   3'- uGGU--GCC-GUCGGaaGaUGUGCaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.