miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14365 3' -56.2 NC_003521.1 + 45491 1.12 0.002967
Target:  5'- cACCACGGCAGCCUUCUACACGUCGCCg -3'
miRNA:   3'- -UGGUGCCGUCGGAAGAUGUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 31335 0.82 0.249911
Target:  5'- cAUCGCGGCcucgccuuuaaacAGCCUgaugagccgCUGCACGUCGCCg -3'
miRNA:   3'- -UGGUGCCG-------------UCGGAa--------GAUGUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 167184 0.81 0.262348
Target:  5'- gGCCGCGGCggaGGCCUUCUGCuugggcuggcagGCG-CGCCg -3'
miRNA:   3'- -UGGUGCCG---UCGGAAGAUG------------UGCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 130672 0.8 0.29398
Target:  5'- cAUCAUGGCGGCCUUCcACGgGUaCGCCg -3'
miRNA:   3'- -UGGUGCCGUCGGAAGaUGUgCA-GCGG- -5'
14365 3' -56.2 NC_003521.1 + 42608 0.8 0.307441
Target:  5'- uACCACGGCcGCCggCgGCGcCGUCGCCg -3'
miRNA:   3'- -UGGUGCCGuCGGaaGaUGU-GCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 163246 0.8 0.314347
Target:  5'- gGCCACGGCGGUCUUCaACGCcuugaCGCCg -3'
miRNA:   3'- -UGGUGCCGUCGGAAGaUGUGca---GCGG- -5'
14365 3' -56.2 NC_003521.1 + 182011 0.78 0.381718
Target:  5'- cGCCACGcGCuGCCUgcucgagaccgUCUAUGCGUCGUCg -3'
miRNA:   3'- -UGGUGC-CGuCGGA-----------AGAUGUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 124874 0.77 0.449165
Target:  5'- aGCgGCGGCAGCaggCacaGCGCGUCGCCc -3'
miRNA:   3'- -UGgUGCCGUCGgaaGa--UGUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 91516 0.76 0.476104
Target:  5'- gACCACGGCGGCCgcgUCgucgcgcuccaGCACGUacuugugggCGCCg -3'
miRNA:   3'- -UGGUGCCGUCGGa--AGa----------UGUGCA---------GCGG- -5'
14365 3' -56.2 NC_003521.1 + 152174 0.76 0.476104
Target:  5'- gACC-UGGCGGCCcUCUGCGCcUCGCUg -3'
miRNA:   3'- -UGGuGCCGUCGGaAGAUGUGcAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 144907 0.76 0.484342
Target:  5'- cCCACGGCAuGCCgguggccgaggagUUCaugucGCGCGUCGCCg -3'
miRNA:   3'- uGGUGCCGU-CGG-------------AAGa----UGUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 139777 0.76 0.485262
Target:  5'- gGCCGuCGGCGGCCgccauggagCUGCACGggcgUGCCc -3'
miRNA:   3'- -UGGU-GCCGUCGGaa-------GAUGUGCa---GCGG- -5'
14365 3' -56.2 NC_003521.1 + 74709 0.76 0.494502
Target:  5'- cGCCGCGGCAGCggcucccugcuCUcCUGCuCGUCGUCg -3'
miRNA:   3'- -UGGUGCCGUCG-----------GAaGAUGuGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 91922 0.76 0.494502
Target:  5'- uGCCGCGGCGGCgCUcCUcgGCGUCgGCCa -3'
miRNA:   3'- -UGGUGCCGUCG-GAaGAugUGCAG-CGG- -5'
14365 3' -56.2 NC_003521.1 + 192066 0.76 0.498221
Target:  5'- uCCGCGGCgguuugugaggcgucGGCUUgugCUGCAgCGUCGCCg -3'
miRNA:   3'- uGGUGCCG---------------UCGGAa--GAUGU-GCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 97272 0.76 0.513218
Target:  5'- aGCgAUGGCGGCUg-CUGCuCGUCGCCg -3'
miRNA:   3'- -UGgUGCCGUCGGaaGAUGuGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 25536 0.75 0.522684
Target:  5'- cGCCgcugGCGGUGGCCUgccUCUGCAUcUCGCCc -3'
miRNA:   3'- -UGG----UGCCGUCGGA---AGAUGUGcAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 127741 0.75 0.522684
Target:  5'- cACC-CGGCGGCCgUCUGCGCcUCGUa -3'
miRNA:   3'- -UGGuGCCGUCGGaAGAUGUGcAGCGg -5'
14365 3' -56.2 NC_003521.1 + 164481 0.75 0.551464
Target:  5'- cGCCGCcGCAGCCgUC-AC-CGUCGCCu -3'
miRNA:   3'- -UGGUGcCGUCGGaAGaUGuGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 124455 0.75 0.570916
Target:  5'- gGCCGCGGCGGC-----ACGCGuUCGCCg -3'
miRNA:   3'- -UGGUGCCGUCGgaagaUGUGC-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.