miRNA display CGI


Results 21 - 40 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14365 3' -56.2 NC_003521.1 + 44072 0.66 0.961209
Target:  5'- gGCCGgGGCAGCagacggUGCAgG-CGCCg -3'
miRNA:   3'- -UGGUgCCGUCGgaag--AUGUgCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 40518 0.66 0.961209
Target:  5'- uCCGacCGGcCGGCCcgCcGCACGcCGCCg -3'
miRNA:   3'- uGGU--GCC-GUCGGaaGaUGUGCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 109756 0.66 0.961209
Target:  5'- aGCCGCGGUcGCCgccacCGCGUCcgagGCCc -3'
miRNA:   3'- -UGGUGCCGuCGGaagauGUGCAG----CGG- -5'
14365 3' -56.2 NC_003521.1 + 129433 0.66 0.961209
Target:  5'- aGCCGCuGCAGCgCgUCcccuC-CGUCGCCg -3'
miRNA:   3'- -UGGUGcCGUCG-GaAGau--GuGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 119905 0.66 0.961209
Target:  5'- cGCCGCgGGCAGCCgcaaacGCAagcaGcCGCCc -3'
miRNA:   3'- -UGGUG-CCGUCGGaaga--UGUg---CaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 122617 0.66 0.961209
Target:  5'- gACgGCGGCGGCC----GCGCGcUCGgCg -3'
miRNA:   3'- -UGgUGCCGUCGGaagaUGUGC-AGCgG- -5'
14365 3' -56.2 NC_003521.1 + 152314 0.66 0.961209
Target:  5'- -gCACGGCuGCgagucgCUGCGCGU-GCCg -3'
miRNA:   3'- ugGUGCCGuCGgaa---GAUGUGCAgCGG- -5'
14365 3' -56.2 NC_003521.1 + 86111 0.66 0.961209
Target:  5'- aGCCGCuGGaUGGUgUUCUccucgcGCGCGUCGCa -3'
miRNA:   3'- -UGGUG-CC-GUCGgAAGA------UGUGCAGCGg -5'
14365 3' -56.2 NC_003521.1 + 127399 0.66 0.961209
Target:  5'- gGCCACaGGCGGUggUCgugcaGCGCGUucacguaggcCGCCa -3'
miRNA:   3'- -UGGUG-CCGUCGgaAGa----UGUGCA----------GCGG- -5'
14365 3' -56.2 NC_003521.1 + 151666 0.66 0.961209
Target:  5'- cCCACGGCccAGCCguccagggUCUuGCG-GUCGUCa -3'
miRNA:   3'- uGGUGCCG--UCGGa-------AGA-UGUgCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 214695 0.66 0.961209
Target:  5'- gACCACGacguugcguuGCAGCCagaagacCGCGUCGUCu -3'
miRNA:   3'- -UGGUGC----------CGUCGGaagau--GUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 195108 0.66 0.961209
Target:  5'- gUCGCGGgGGUCcUCgucauCGUCGCCg -3'
miRNA:   3'- uGGUGCCgUCGGaAGaugu-GCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 240745 0.66 0.961209
Target:  5'- uCCGacCGGcCGGCCcgCcGCACGcCGCCg -3'
miRNA:   3'- uGGU--GCC-GUCGGaaGaUGUGCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 130101 0.66 0.961209
Target:  5'- uGCCAgCuGCcgGGCCUcuUCUGCcccuGCGUCGUCg -3'
miRNA:   3'- -UGGU-GcCG--UCGGA--AGAUG----UGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 196 0.66 0.961209
Target:  5'- uCCGacCGGcCGGCCcgCcGCACGcCGCCg -3'
miRNA:   3'- uGGU--GCC-GUCGGaaGaUGUGCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 212289 0.66 0.960869
Target:  5'- gGCCAgGGCgaaGGCCggCauggGCACGcaggcguugauacUCGCCa -3'
miRNA:   3'- -UGGUgCCG---UCGGaaGa---UGUGC-------------AGCGG- -5'
14365 3' -56.2 NC_003521.1 + 32353 0.66 0.960869
Target:  5'- uGCCGgagcCGGCgggacggGGCUUUUggugGCGCGUgGCCa -3'
miRNA:   3'- -UGGU----GCCG-------UCGGAAGa---UGUGCAgCGG- -5'
14365 3' -56.2 NC_003521.1 + 112364 0.66 0.960182
Target:  5'- cGCaCGCGGCGGCUgcggcgUCUcguccaccuggcugGCGCaGUgCGCCg -3'
miRNA:   3'- -UG-GUGCCGUCGGa-----AGA--------------UGUG-CA-GCGG- -5'
14365 3' -56.2 NC_003521.1 + 219534 0.66 0.959836
Target:  5'- cGCCACGcGCAGCCagaccgcgaagcgUCcagAUACGggGCCa -3'
miRNA:   3'- -UGGUGC-CGUCGGa------------AGa--UGUGCagCGG- -5'
14365 3' -56.2 NC_003521.1 + 111193 0.66 0.957713
Target:  5'- cGCCGCGGaCGGUgggCUGgGCGauggCGCCg -3'
miRNA:   3'- -UGGUGCC-GUCGgaaGAUgUGCa---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.