miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14365 3' -56.2 NC_003521.1 + 196 0.66 0.961209
Target:  5'- uCCGacCGGcCGGCCcgCcGCACGcCGCCg -3'
miRNA:   3'- uGGU--GCC-GUCGGaaGaUGUGCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 1165 0.68 0.885848
Target:  5'- aGCCACGGCGccGCCUacgggaCUGgACGgccugUGCCa -3'
miRNA:   3'- -UGGUGCCGU--CGGAa-----GAUgUGCa----GCGG- -5'
14365 3' -56.2 NC_003521.1 + 1625 0.69 0.879077
Target:  5'- uGCUGCGGguGgCUguuUCUGgGCGUCGUg -3'
miRNA:   3'- -UGGUGCCguCgGA---AGAUgUGCAGCGg -5'
14365 3' -56.2 NC_003521.1 + 3647 0.72 0.737358
Target:  5'- uGCCACGGCcGCCgccgUCUGCcuCGgcgGCCg -3'
miRNA:   3'- -UGGUGCCGuCGGa---AGAUGu-GCag-CGG- -5'
14365 3' -56.2 NC_003521.1 + 3902 0.7 0.80951
Target:  5'- gGCuCGCGGCAcGCUcuUUCUucAgGCGUUGCCa -3'
miRNA:   3'- -UG-GUGCCGU-CGG--AAGA--UgUGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 5536 0.71 0.765286
Target:  5'- gUgACGGCAGCCg---GCGCGgcCGCCg -3'
miRNA:   3'- uGgUGCCGUCGGaagaUGUGCa-GCGG- -5'
14365 3' -56.2 NC_003521.1 + 6403 0.66 0.945954
Target:  5'- uACCGCGGCGGCg----ACGgGUCuuGCCg -3'
miRNA:   3'- -UGGUGCCGUCGgaagaUGUgCAG--CGG- -5'
14365 3' -56.2 NC_003521.1 + 6630 0.66 0.957713
Target:  5'- gGCCGCGcGCgaacgcuuGGCCcgCuUGCgACGUUGCCa -3'
miRNA:   3'- -UGGUGC-CG--------UCGGaaG-AUG-UGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 7608 0.67 0.9416
Target:  5'- aGCCGUGuGCgaAGCCUaugCUACGCGcugCGCCu -3'
miRNA:   3'- -UGGUGC-CG--UCGGAa--GAUGUGCa--GCGG- -5'
14365 3' -56.2 NC_003521.1 + 7660 0.67 0.9416
Target:  5'- cGCCACGGCGGCgCgg--ACAgCGgUGCCc -3'
miRNA:   3'- -UGGUGCCGUCG-GaagaUGU-GCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 11740 0.71 0.774385
Target:  5'- uACCACGGUuuGGCCaUC--CACGcCGCCu -3'
miRNA:   3'- -UGGUGCCG--UCGGaAGauGUGCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 13919 0.7 0.834301
Target:  5'- gGCCGCGGaGGCCgc--GCugGcCGCCg -3'
miRNA:   3'- -UGGUGCCgUCGGaagaUGugCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 14763 0.66 0.9645
Target:  5'- gGCCGgGGCGcGCCUUCguggccgaggUGCugGUgcUGCUg -3'
miRNA:   3'- -UGGUgCCGU-CGGAAG----------AUGugCA--GCGG- -5'
14365 3' -56.2 NC_003521.1 + 15224 0.69 0.864921
Target:  5'- gGCUGCaGGCGGCCga--GCGCGagGCCg -3'
miRNA:   3'- -UGGUG-CCGUCGGaagaUGUGCagCGG- -5'
14365 3' -56.2 NC_003521.1 + 15746 0.67 0.937025
Target:  5'- uGCCAuCGGC-GCCUggaaugguUCUGCaaaACGUCGUUc -3'
miRNA:   3'- -UGGU-GCCGuCGGA--------AGAUG---UGCAGCGG- -5'
14365 3' -56.2 NC_003521.1 + 18167 0.67 0.932227
Target:  5'- -gCugGGCAGCgUggaggcgCUGCGCGcCuGCCg -3'
miRNA:   3'- ugGugCCGUCGgAa------GAUGUGCaG-CGG- -5'
14365 3' -56.2 NC_003521.1 + 18218 0.66 0.96418
Target:  5'- gGCCGCGGaguuCCgcgagCUGCGCGUuuucaucCGCCa -3'
miRNA:   3'- -UGGUGCCguc-GGaa---GAUGUGCA-------GCGG- -5'
14365 3' -56.2 NC_003521.1 + 18726 0.67 0.937025
Target:  5'- uGCCgcugGCGGCGGCgaUCgugGCGgCGguggCGCCg -3'
miRNA:   3'- -UGG----UGCCGUCGgaAGa--UGU-GCa---GCGG- -5'
14365 3' -56.2 NC_003521.1 + 18904 0.74 0.598411
Target:  5'- cGCCGCGGCAGCCccgaaggguggCgcCGCG-CGCCg -3'
miRNA:   3'- -UGGUGCCGUCGGaa---------GauGUGCaGCGG- -5'
14365 3' -56.2 NC_003521.1 + 19485 0.74 0.600383
Target:  5'- cGCCgcaaaGCGGCAGCCUUCUuccucuCAgcUGUCGCg -3'
miRNA:   3'- -UGG-----UGCCGUCGGAAGAu-----GU--GCAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.