miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14365 5' -60.7 NC_003521.1 + 143142 0.66 0.832511
Target:  5'- ----cGGCgagGGAGUGGGCGUCCuCGa -3'
miRNA:   3'- cguacCUGaa-CCUCGCCCGCGGG-GCa -5'
14365 5' -60.7 NC_003521.1 + 91179 0.66 0.832511
Target:  5'- cGCAUGcGcCUcUGGAagcgguaccGCGGGCGCgUCGUg -3'
miRNA:   3'- -CGUAC-CuGA-ACCU---------CGCCCGCGgGGCA- -5'
14365 5' -60.7 NC_003521.1 + 177807 0.66 0.832511
Target:  5'- -gGUGGGCguc--GUGGGCGCCgCCGg -3'
miRNA:   3'- cgUACCUGaaccuCGCCCGCGG-GGCa -5'
14365 5' -60.7 NC_003521.1 + 170855 0.66 0.830939
Target:  5'- cGCGUcGGCUUcuccgcgGGGGCGGGCGCggguggucaggcgUCCGg -3'
miRNA:   3'- -CGUAcCUGAA-------CCUCGCCCGCG-------------GGGCa -5'
14365 5' -60.7 NC_003521.1 + 215039 0.66 0.824587
Target:  5'- -gGUGGGCUgcagccgcgUGGAGCcccuGGGCuGCCUgGUg -3'
miRNA:   3'- cgUACCUGA---------ACCUCG----CCCG-CGGGgCA- -5'
14365 5' -60.7 NC_003521.1 + 224014 0.66 0.824587
Target:  5'- gGCAgcggcGGGCccggcggucGGGGCGGGCGCCgUCGc -3'
miRNA:   3'- -CGUa----CCUGaa-------CCUCGCCCGCGG-GGCa -5'
14365 5' -60.7 NC_003521.1 + 161748 0.66 0.816509
Target:  5'- aGCGUGGg---GGAGCuGGUGCCCg-- -3'
miRNA:   3'- -CGUACCugaaCCUCGcCCGCGGGgca -5'
14365 5' -60.7 NC_003521.1 + 171296 0.66 0.816509
Target:  5'- cGCGUGGGC-UGGAagGCGGuGCuggGCCUCa- -3'
miRNA:   3'- -CGUACCUGaACCU--CGCC-CG---CGGGGca -5'
14365 5' -60.7 NC_003521.1 + 65353 0.66 0.814875
Target:  5'- uGCA-GGACgugcuguccggGGAGaCGGcGCGCCgCCGa -3'
miRNA:   3'- -CGUaCCUGaa---------CCUC-GCC-CGCGG-GGCa -5'
14365 5' -60.7 NC_003521.1 + 38466 0.66 0.808281
Target:  5'- cGUcUGGGCUcUGGcGGUGGGCGCCggCGUu -3'
miRNA:   3'- -CGuACCUGA-ACC-UCGCCCGCGGg-GCA- -5'
14365 5' -60.7 NC_003521.1 + 148627 0.66 0.799912
Target:  5'- aGCAgGGGCgggGGAG-GGGaggccagggcauCGCCCCGa -3'
miRNA:   3'- -CGUaCCUGaa-CCUCgCCC------------GCGGGGCa -5'
14365 5' -60.7 NC_003521.1 + 154286 0.66 0.799912
Target:  5'- cGCGUGGAgc-GGGGCGgcacGGCGUCCgGg -3'
miRNA:   3'- -CGUACCUgaaCCUCGC----CCGCGGGgCa -5'
14365 5' -60.7 NC_003521.1 + 118930 0.66 0.799912
Target:  5'- gGCGUGGGC----GGC-GGCGUCCCGUc -3'
miRNA:   3'- -CGUACCUGaaccUCGcCCGCGGGGCA- -5'
14365 5' -60.7 NC_003521.1 + 152359 0.66 0.791408
Target:  5'- uGCucugGGGCcggccGGGGCGGcGCGCCCUc- -3'
miRNA:   3'- -CGua--CCUGaa---CCUCGCC-CGCGGGGca -5'
14365 5' -60.7 NC_003521.1 + 54157 0.66 0.791408
Target:  5'- ---aGGACgaGGAGUgcuGGGgGCCCCuGUg -3'
miRNA:   3'- cguaCCUGaaCCUCG---CCCgCGGGG-CA- -5'
14365 5' -60.7 NC_003521.1 + 150754 0.67 0.782777
Target:  5'- uGCccGGACUgcuccGcGAGCGcgucGGCGUCCCGg -3'
miRNA:   3'- -CGuaCCUGAa----C-CUCGC----CCGCGGGGCa -5'
14365 5' -60.7 NC_003521.1 + 35814 0.67 0.782777
Target:  5'- gGCGUGGGCgagaaccuGGCGGuGCGCgCCGa -3'
miRNA:   3'- -CGUACCUGaacc----UCGCC-CGCGgGGCa -5'
14365 5' -60.7 NC_003521.1 + 59215 0.67 0.782777
Target:  5'- cGCGUGGAgaUcGGGGCccuGGaCGCCCUGg -3'
miRNA:   3'- -CGUACCUgaA-CCUCGc--CC-GCGGGGCa -5'
14365 5' -60.7 NC_003521.1 + 114590 0.67 0.766053
Target:  5'- gGCGUGGACcugacuaucaagaugUGGuucGUcauGGGCGCCCCu- -3'
miRNA:   3'- -CGUACCUGa--------------ACCu--CG---CCCGCGGGGca -5'
14365 5' -60.7 NC_003521.1 + 206437 0.67 0.765162
Target:  5'- gGCGUGGugUagcgauugacgUGG-GCGGGggauUGCCCCa- -3'
miRNA:   3'- -CGUACCugA-----------ACCuCGCCC----GCGGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.