miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14365 5' -60.7 NC_003521.1 + 5304 0.71 0.528781
Target:  5'- gGCAUGuuuCgcgGGGGCGGcGUGCCCCGc -3'
miRNA:   3'- -CGUACcu-Gaa-CCUCGCC-CGCGGGGCa -5'
14365 5' -60.7 NC_003521.1 + 35814 0.67 0.782777
Target:  5'- gGCGUGGGCgagaaccuGGCGGuGCGCgCCGa -3'
miRNA:   3'- -CGUACCUGaacc----UCGCC-CGCGgGGCa -5'
14365 5' -60.7 NC_003521.1 + 38466 0.66 0.808281
Target:  5'- cGUcUGGGCUcUGGcGGUGGGCGCCggCGUu -3'
miRNA:   3'- -CGuACCUGA-ACC-UCGCCCGCGGg-GCA- -5'
14365 5' -60.7 NC_003521.1 + 39005 0.72 0.492138
Target:  5'- ---aGGugUcgaggccGGAGCGGGCGCCgCCGa -3'
miRNA:   3'- cguaCCugAa------CCUCGCCCGCGG-GGCa -5'
14365 5' -60.7 NC_003521.1 + 41627 0.7 0.604638
Target:  5'- cCGUGGuC-UGGGGCGuGGCGCCCg-- -3'
miRNA:   3'- cGUACCuGaACCUCGC-CCGCGGGgca -5'
14365 5' -60.7 NC_003521.1 + 45525 1.08 0.002012
Target:  5'- cGCAUGGACUUGGAGCGGGCGCCCCGUc -3'
miRNA:   3'- -CGUACCUGAACCUCGCCCGCGGGGCA- -5'
14365 5' -60.7 NC_003521.1 + 54157 0.66 0.791408
Target:  5'- ---aGGACgaGGAGUgcuGGGgGCCCCuGUg -3'
miRNA:   3'- cguaCCUGaaCCUCG---CCCgCGGGG-CA- -5'
14365 5' -60.7 NC_003521.1 + 59215 0.67 0.782777
Target:  5'- cGCGUGGAgaUcGGGGCccuGGaCGCCCUGg -3'
miRNA:   3'- -CGUACCUgaA-CCUCGc--CC-GCGGGGCa -5'
14365 5' -60.7 NC_003521.1 + 65353 0.66 0.814875
Target:  5'- uGCA-GGACgugcuguccggGGAGaCGGcGCGCCgCCGa -3'
miRNA:   3'- -CGUaCCUGaa---------CCUC-GCC-CGCGG-GGCa -5'
14365 5' -60.7 NC_003521.1 + 68621 0.68 0.719424
Target:  5'- cCGUGGACUUcc--UGGGCGCCCUGa -3'
miRNA:   3'- cGUACCUGAAccucGCCCGCGGGGCa -5'
14365 5' -60.7 NC_003521.1 + 72663 0.68 0.728735
Target:  5'- -gAUGGGCcUGG-GC-GGCGCCCCu- -3'
miRNA:   3'- cgUACCUGaACCuCGcCCGCGGGGca -5'
14365 5' -60.7 NC_003521.1 + 77845 0.67 0.756193
Target:  5'- cGCAUGGGgauCUUGGccAGaCGGGCgauggcgccgGCCUCGUa -3'
miRNA:   3'- -CGUACCU---GAACC--UC-GCCCG----------CGGGGCA- -5'
14365 5' -60.7 NC_003521.1 + 81926 0.69 0.623897
Target:  5'- ---gGGuACUUGGAGCGGGCggugGUCaCCGUc -3'
miRNA:   3'- cguaCC-UGAACCUCGCCCG----CGG-GGCA- -5'
14365 5' -60.7 NC_003521.1 + 83697 0.7 0.585452
Target:  5'- -uGUGGACgcGcGAGCGGGCGUCCa-- -3'
miRNA:   3'- cgUACCUGaaC-CUCGCCCGCGGGgca -5'
14365 5' -60.7 NC_003521.1 + 87142 0.79 0.179369
Target:  5'- cGCGaGGugUUGGAGCGGGCGCaguUCGUg -3'
miRNA:   3'- -CGUaCCugAACCUCGCCCGCGg--GGCA- -5'
14365 5' -60.7 NC_003521.1 + 91179 0.66 0.832511
Target:  5'- cGCAUGcGcCUcUGGAagcgguaccGCGGGCGCgUCGUg -3'
miRNA:   3'- -CGUAC-CuGA-ACCU---------CGCCCGCGgGGCA- -5'
14365 5' -60.7 NC_003521.1 + 100070 0.69 0.662428
Target:  5'- cGCccGG-CacGGAgGCGGGCGCCUCGa -3'
miRNA:   3'- -CGuaCCuGaaCCU-CGCCCGCGGGGCa -5'
14365 5' -60.7 NC_003521.1 + 110516 0.72 0.46544
Target:  5'- -aGUGGACcUGGAuGCGcGGCGCCgCGg -3'
miRNA:   3'- cgUACCUGaACCU-CGC-CCGCGGgGCa -5'
14365 5' -60.7 NC_003521.1 + 111786 0.69 0.662428
Target:  5'- uCGUGGACUUuGAguuucuGCGGGUGCCCUc- -3'
miRNA:   3'- cGUACCUGAAcCU------CGCCCGCGGGGca -5'
14365 5' -60.7 NC_003521.1 + 114590 0.67 0.766053
Target:  5'- gGCGUGGACcugacuaucaagaugUGGuucGUcauGGGCGCCCCu- -3'
miRNA:   3'- -CGUACCUGa--------------ACCu--CG---CCCGCGGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.