miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1437 5' -48.3 NC_001335.1 + 48229 0.66 0.97521
Target:  5'- -------aCGACACGUUCGuccacGCCAACa -3'
miRNA:   3'- cugaagaaGCUGUGCAAGC-----UGGUUGa -5'
1437 5' -48.3 NC_001335.1 + 15304 0.67 0.965427
Target:  5'- aGCUUCUUgGGCuuCGUggCGAUCAGCc -3'
miRNA:   3'- cUGAAGAAgCUGu-GCAa-GCUGGUUGa -5'
1437 5' -48.3 NC_001335.1 + 31057 0.67 0.961634
Target:  5'- aGCUUCUU--GCG-GUUCGGCCGGCUc -3'
miRNA:   3'- cUGAAGAAgcUGUgCAAGCUGGUUGA- -5'
1437 5' -48.3 NC_001335.1 + 9397 0.68 0.920803
Target:  5'- uGGCgaUCUgaUCGGCGCGUuggugaagUUGGCCAGCUc -3'
miRNA:   3'- -CUGa-AGA--AGCUGUGCA--------AGCUGGUUGA- -5'
1437 5' -48.3 NC_001335.1 + 40495 0.69 0.893146
Target:  5'- aGCUUCUUCGACGCGguguccgCGuugauugagcACCGGCc -3'
miRNA:   3'- cUGAAGAAGCUGUGCaa-----GC----------UGGUUGa -5'
1437 5' -48.3 NC_001335.1 + 786 0.69 0.885492
Target:  5'- ----cCUUCGGCAUGUUCGuCCAgagGCUg -3'
miRNA:   3'- cugaaGAAGCUGUGCAAGCuGGU---UGA- -5'
1437 5' -48.3 NC_001335.1 + 27657 0.7 0.877552
Target:  5'- cGAgUUCUUCGACAUccUCuACCAGCa -3'
miRNA:   3'- -CUgAAGAAGCUGUGcaAGcUGGUUGa -5'
1437 5' -48.3 NC_001335.1 + 47330 0.7 0.869333
Target:  5'- aGGCUUCggcCGACccaaucACG-UCGACCAGCg -3'
miRNA:   3'- -CUGAAGaa-GCUG------UGCaAGCUGGUUGa -5'
1437 5' -48.3 NC_001335.1 + 21273 0.72 0.794587
Target:  5'- cGGCU--UUCGGCACG-UCGACUGGCUc -3'
miRNA:   3'- -CUGAagAAGCUGUGCaAGCUGGUUGA- -5'
1437 5' -48.3 NC_001335.1 + 15696 0.75 0.581543
Target:  5'- uGGCUUCUUCGGauCACGaUUCG-CCAGCa -3'
miRNA:   3'- -CUGAAGAAGCU--GUGC-AAGCuGGUUGa -5'
1437 5' -48.3 NC_001335.1 + 3616 1.1 0.004867
Target:  5'- cGACUUCUUCGACACGUUCGACCAACUa -3'
miRNA:   3'- -CUGAAGAAGCUGUGCAAGCUGGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.