miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 3' -57.1 NC_003521.1 + 37109 0.66 0.92369
Target:  5'- cCcgGCUGCUGCUGCCGuCGcuacUGGcGGAc -3'
miRNA:   3'- -GuaCGACGAUGGCGGCcGCa---ACC-UCU- -5'
14371 3' -57.1 NC_003521.1 + 98148 0.66 0.92369
Target:  5'- --aGCUGCUGCCGCCGuCGcUGcuGAc -3'
miRNA:   3'- guaCGACGAUGGCGGCcGCaACcuCU- -5'
14371 3' -57.1 NC_003521.1 + 144896 0.66 0.92369
Target:  5'- gAUGCUGCggGCCcacggcauGCCGGUGgccgaGGAGu -3'
miRNA:   3'- gUACGACGa-UGG--------CGGCCGCaa---CCUCu -5'
14371 3' -57.1 NC_003521.1 + 200064 0.66 0.92369
Target:  5'- aCcgGCUgGCUuACCGCCGGC-UUGGc-- -3'
miRNA:   3'- -GuaCGA-CGA-UGGCGGCCGcAACCucu -5'
14371 3' -57.1 NC_003521.1 + 225076 0.66 0.92369
Target:  5'- gCAUGCUGCUGCC-CgGGCGcaccugcaGGAa- -3'
miRNA:   3'- -GUACGACGAUGGcGgCCGCaa------CCUcu -5'
14371 3' -57.1 NC_003521.1 + 35484 0.66 0.918278
Target:  5'- --cGCaGCUGCCGCCGcCGa-GGAGGc -3'
miRNA:   3'- guaCGaCGAUGGCGGCcGCaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 220529 0.66 0.918278
Target:  5'- gGUGCUGCaUGgCGCCGGCGa------ -3'
miRNA:   3'- gUACGACG-AUgGCGGCCGCaaccucu -5'
14371 3' -57.1 NC_003521.1 + 158186 0.66 0.916051
Target:  5'- -uUGCUGCggacgcccuccuCCGgCGGCGUguaUGGAGc -3'
miRNA:   3'- guACGACGau----------GGCgGCCGCA---ACCUCu -5'
14371 3' -57.1 NC_003521.1 + 209128 0.66 0.913216
Target:  5'- aCAUGCUGCcGCCGCCccacuuucaccUGGAGAa -3'
miRNA:   3'- -GUACGACGaUGGCGGccgca------ACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 17771 0.67 0.90738
Target:  5'- uGUGCUGUgacgaugaccuggagGCCGUCGGCGUgcUGGc-- -3'
miRNA:   3'- gUACGACGa--------------UGGCGGCCGCA--ACCucu -5'
14371 3' -57.1 NC_003521.1 + 145612 0.67 0.906784
Target:  5'- --cGCUGCUGCagucgcacccggUGCCgGGCG-UGGAGu -3'
miRNA:   3'- guaCGACGAUG------------GCGG-CCGCaACCUCu -5'
14371 3' -57.1 NC_003521.1 + 45509 0.67 0.900704
Target:  5'- -cUGUUGCgcuCCGCCgagaggacugGGCGUggacGGAGAu -3'
miRNA:   3'- guACGACGau-GGCGG----------CCGCAa---CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 144112 0.67 0.900704
Target:  5'- --gGCUGCUggACCGCCG-CGgccUGGAcGAg -3'
miRNA:   3'- guaCGACGA--UGGCGGCcGCa--ACCU-CU- -5'
14371 3' -57.1 NC_003521.1 + 144298 0.67 0.894405
Target:  5'- --cGCUGCUGCCGCaCGcgcuGCGguucgUGGAc- -3'
miRNA:   3'- guaCGACGAUGGCG-GC----CGCa----ACCUcu -5'
14371 3' -57.1 NC_003521.1 + 154467 0.67 0.894405
Target:  5'- --cGCUGUUggucaccggcACCGCCGGCGccGGcaAGAc -3'
miRNA:   3'- guaCGACGA----------UGGCGGCCGCaaCC--UCU- -5'
14371 3' -57.1 NC_003521.1 + 182096 0.67 0.887891
Target:  5'- -cUGCUGC-ACCGCCGcc--UGGAGAc -3'
miRNA:   3'- guACGACGaUGGCGGCcgcaACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 98866 0.67 0.881165
Target:  5'- gGUaCUGCUACCGCCGcuCGUgcuaGGGGGc -3'
miRNA:   3'- gUAcGACGAUGGCGGCc-GCAa---CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 44637 0.67 0.881165
Target:  5'- gAUGaUGCgcCUGUgGGUGUUGGAGAa -3'
miRNA:   3'- gUACgACGauGGCGgCCGCAACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 2753 0.67 0.881165
Target:  5'- -cUGCUGCUACUGCaaagGGaCGacGGAGGu -3'
miRNA:   3'- guACGACGAUGGCGg---CC-GCaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 184746 0.67 0.881164
Target:  5'- gCGUGCUGCgcgaGCUGGUGacGGAGGc -3'
miRNA:   3'- -GUACGACGauggCGGCCGCaaCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.