miRNA display CGI


Results 21 - 40 of 338 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 5' -62 NC_003521.1 + 55953 0.66 0.81435
Target:  5'- gCCUCUGUggaCGCUGCUGUGCcuGGgGUCGGc -3'
miRNA:   3'- -GGAGGCG---GUGGCGGCGCG--CUgCAGCU- -5'
14371 5' -62 NC_003521.1 + 32635 0.66 0.813554
Target:  5'- gUUCCGUCAUCGCgGCGgcgcagaCGACGgCGGa -3'
miRNA:   3'- gGAGGCGGUGGCGgCGC-------GCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 138313 0.66 0.811957
Target:  5'- aCUUCGUgGCCgacauggaccugcgGCUGCGCGACGgcgucUCGGg -3'
miRNA:   3'- gGAGGCGgUGG--------------CGGCGCGCUGC-----AGCU- -5'
14371 5' -62 NC_003521.1 + 128034 0.66 0.809551
Target:  5'- aCCUCgCGCCGCaCGCgguagaaguggccgaCGCGCcGCG-CGAu -3'
miRNA:   3'- -GGAG-GCGGUG-GCG---------------GCGCGcUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 166324 0.66 0.806324
Target:  5'- gCUCUGCUccaGCaGCUGCGCGAaGUCGc -3'
miRNA:   3'- gGAGGCGG---UGgCGGCGCGCUgCAGCu -5'
14371 5' -62 NC_003521.1 + 19820 0.66 0.806324
Target:  5'- gCUUCCugacgcugGCCACCuacacguucGCC-CGCGACGUgGAg -3'
miRNA:   3'- -GGAGG--------CGGUGG---------CGGcGCGCUGCAgCU- -5'
14371 5' -62 NC_003521.1 + 167582 0.66 0.806324
Target:  5'- uCgUCaCGCCGCUGCUGUugccgcucgugGUGGCGUUGGu -3'
miRNA:   3'- -GgAG-GCGGUGGCGGCG-----------CGCUGCAGCU- -5'
14371 5' -62 NC_003521.1 + 29738 0.66 0.806324
Target:  5'- cCCUCCaGuCCcCCGCCGgGCaACGgCGAc -3'
miRNA:   3'- -GGAGG-C-GGuGGCGGCgCGcUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 127474 0.66 0.806324
Target:  5'- --cCCGCCAgCGCCGagauGCG-CGUCa- -3'
miRNA:   3'- ggaGGCGGUgGCGGCg---CGCuGCAGcu -5'
14371 5' -62 NC_003521.1 + 2362 0.66 0.806324
Target:  5'- gUCUCCGCCccgcccgccgagGCCGCCcuGCGCcuccugcccGACcUCGAc -3'
miRNA:   3'- -GGAGGCGG------------UGGCGG--CGCG---------CUGcAGCU- -5'
14371 5' -62 NC_003521.1 + 68027 0.66 0.806324
Target:  5'- gCCUcaCCGCCACgGgCG-GCGugGUCc- -3'
miRNA:   3'- -GGA--GGCGGUGgCgGCgCGCugCAGcu -5'
14371 5' -62 NC_003521.1 + 125392 0.66 0.806324
Target:  5'- aCCaCCGUCACCcCCGCgccGCGGCGcUGAg -3'
miRNA:   3'- -GGaGGCGGUGGcGGCG---CGCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 162761 0.66 0.806324
Target:  5'- aUCUUCGaCACCGCa-CGCGugGUgGAc -3'
miRNA:   3'- -GGAGGCgGUGGCGgcGCGCugCAgCU- -5'
14371 5' -62 NC_003521.1 + 123481 0.66 0.806324
Target:  5'- gCUCCGUguCCGUCGCcgGCGGggUGUCGu -3'
miRNA:   3'- gGAGGCGguGGCGGCG--CGCU--GCAGCu -5'
14371 5' -62 NC_003521.1 + 142196 0.66 0.805514
Target:  5'- gCUaCCGCCGCCGCCGCucucgcccuccucGCcauggccuCGUCGc -3'
miRNA:   3'- gGA-GGCGGUGGCGGCG-------------CGcu------GCAGCu -5'
14371 5' -62 NC_003521.1 + 22781 0.66 0.805514
Target:  5'- aCCUCaucuaccugcggaCGCCGCCGCCGCccaagaaCGGgGUCu- -3'
miRNA:   3'- -GGAG-------------GCGGUGGCGGCGc------GCUgCAGcu -5'
14371 5' -62 NC_003521.1 + 147645 0.66 0.804703
Target:  5'- aCCUCCG--ACCGUCGagccccgguagaGgGACGUCGAg -3'
miRNA:   3'- -GGAGGCggUGGCGGCg-----------CgCUGCAGCU- -5'
14371 5' -62 NC_003521.1 + 192031 0.66 0.803891
Target:  5'- gUUCUG-CACCGCCGgcgugcgcggcagaCGCGGCGUCc- -3'
miRNA:   3'- gGAGGCgGUGGCGGC--------------GCGCUGCAGcu -5'
14371 5' -62 NC_003521.1 + 92239 0.66 0.801445
Target:  5'- --cCCGaCgGgCGCCGCGCGgucuuuuggccggucGCGUCGAc -3'
miRNA:   3'- ggaGGC-GgUgGCGGCGCGC---------------UGCAGCU- -5'
14371 5' -62 NC_003521.1 + 212493 0.66 0.798166
Target:  5'- -aUCgGCCACCggcgguccgcagGCCGCGCcGGgGUCGc -3'
miRNA:   3'- ggAGgCGGUGG------------CGGCGCG-CUgCAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.