miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 3' -55.8 NC_003521.1 + 78890 0.66 0.949798
Target:  5'- cGUCa-GGGGGUCCACGcgggccucguagacgGGGAAGcCGCGc -3'
miRNA:   3'- -CAGggUCUCCAGGUGC---------------UUCUUC-GCGU- -5'
14378 3' -55.8 NC_003521.1 + 66382 0.66 0.956053
Target:  5'- -gCCCAGAGGaUCAUGAaaacucuggacgAGGAGCGgGa -3'
miRNA:   3'- caGGGUCUCCaGGUGCU------------UCUUCGCgU- -5'
14378 3' -55.8 NC_003521.1 + 58861 0.68 0.913382
Target:  5'- -gCCCAGcAGGUaaaggcCCACGAgaGGuGGCGCGg -3'
miRNA:   3'- caGGGUC-UCCA------GGUGCU--UCuUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 56624 1.08 0.005079
Target:  5'- cGUCCCAGAGGUCCACGAAGAAGCGCAc -3'
miRNA:   3'- -CAGGGUCUCCAGGUGCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 53216 0.7 0.812041
Target:  5'- cUCgCCGGGGaGUCCGCGGGcGAAGCGa- -3'
miRNA:   3'- cAG-GGUCUC-CAGGUGCUU-CUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 53057 0.66 0.963098
Target:  5'- -gCCCAGcuccucgcgcAGGggCGCGAAGuuGCGCAg -3'
miRNA:   3'- caGGGUC----------UCCagGUGCUUCuuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 47538 0.73 0.660977
Target:  5'- uGUCCCGGAGGUCguccaugucgaGCGggGAAGacgGCGa -3'
miRNA:   3'- -CAGGGUCUCCAGg----------UGCuuCUUCg--CGU- -5'
14378 3' -55.8 NC_003521.1 + 40978 0.67 0.94386
Target:  5'- -cCCCGGGGGgaCGCGGAGGAGgGgGg -3'
miRNA:   3'- caGGGUCUCCagGUGCUUCUUCgCgU- -5'
14378 3' -55.8 NC_003521.1 + 40343 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 40145 0.67 0.94386
Target:  5'- uUUUCAGAGGcaaaCgGCG-AGAAGCGCAg -3'
miRNA:   3'- cAGGGUCUCCa---GgUGCuUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 39519 0.74 0.601003
Target:  5'- -aUCCAGGGGUCgCGCGGcgAGAgcuGGCGCAg -3'
miRNA:   3'- caGGGUCUCCAG-GUGCU--UCU---UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 38193 0.67 0.919032
Target:  5'- cUCCCAgugcucgcggucGAGGUCgGgcAGGAGGCGCAg -3'
miRNA:   3'- cAGGGU------------CUCCAGgUgcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 36432 0.66 0.959681
Target:  5'- --gUCGGAGGgCCGCGGAGAcgaguuGCGCu -3'
miRNA:   3'- cagGGUCUCCaGGUGCUUCUu-----CGCGu -5'
14378 3' -55.8 NC_003521.1 + 33066 0.71 0.748854
Target:  5'- -gCCCAGcGGGUCCAUGAAGAuGGCcuucuGCAc -3'
miRNA:   3'- caGGGUC-UCCAGGUGCUUCU-UCG-----CGU- -5'
14378 3' -55.8 NC_003521.1 + 29634 0.72 0.720135
Target:  5'- -cCCCGGAGGaaCGCGAAGAagacacgcuccgGGCGCu -3'
miRNA:   3'- caGGGUCUCCagGUGCUUCU------------UCGCGu -5'
14378 3' -55.8 NC_003521.1 + 28890 0.68 0.913382
Target:  5'- cUCaCGGAGGUCUACGA-GAcgcuGCGCGa -3'
miRNA:   3'- cAGgGUCUCCAGGUGCUuCUu---CGCGU- -5'
14378 3' -55.8 NC_003521.1 + 17230 0.71 0.758243
Target:  5'- gGUCUCGGAGG-CCGagguGGAGGCGCGc -3'
miRNA:   3'- -CAGGGUCUCCaGGUgcu-UCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 13909 0.66 0.948146
Target:  5'- -gCgCGGAGGgggCCGCGGAGGccGCGCu -3'
miRNA:   3'- caGgGUCUCCa--GGUGCUUCUu-CGCGu -5'
14378 3' -55.8 NC_003521.1 + 6760 0.72 0.690766
Target:  5'- aGUCCCAGGGcGUCCAUGGccAGGAGUa-- -3'
miRNA:   3'- -CAGGGUCUC-CAGGUGCU--UCUUCGcgu -5'
14378 3' -55.8 NC_003521.1 + 6550 0.67 0.93935
Target:  5'- -cCCCAGggcAGGgCgACGAGGuGGCGCAc -3'
miRNA:   3'- caGGGUC---UCCaGgUGCUUCuUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.