Results 61 - 64 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 92073 | 0.7 | 0.820507 |
Target: 5'- -aCCCAGA--UCCAUGAAGAGGCacuGCAc -3' miRNA: 3'- caGGGUCUccAGGUGCUUCUUCG---CGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 87130 | 0.7 | 0.82881 |
Target: 5'- cGUCCCAaggagcgcGAGGUgUugGAGcGGGCGCAg -3' miRNA: 3'- -CAGGGU--------CUCCAgGugCUUcUUCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 168090 | 0.69 | 0.851897 |
Target: 5'- -cUgCAGAGGUCgGCGAAGAccgaggaGGCGUg -3' miRNA: 3'- caGgGUCUCCAGgUGCUUCU-------UCGCGu -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 185766 | 0.79 | 0.356493 |
Target: 5'- -gCCUAGGGG-CCGCGAuGGAGCGCAa -3' miRNA: 3'- caGGGUCUCCaGGUGCUuCUUCGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home