Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 21 | 0.68 | 0.905698 |
Target: 5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3' miRNA: 3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 657 | 0.67 | 0.94386 |
Target: 5'- -cCCCGGGGGgaCGCGGAGGAGgGgGg -3' miRNA: 3'- caGGGUCUCCagGUGCUUCUUCgCgU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 4028 | 0.72 | 0.729792 |
Target: 5'- cGUUCCucAGGUCCGCGAauAGGAGCGg- -3' miRNA: 3'- -CAGGGucUCCAGGUGCU--UCUUCGCgu -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 6361 | 0.8 | 0.325127 |
Target: 5'- aUCCCAGAGGggccggucggggUCGCGGAGggGCGCc -3' miRNA: 3'- cAGGGUCUCCa-----------GGUGCUUCuuCGCGu -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 6550 | 0.67 | 0.93935 |
Target: 5'- -cCCCAGggcAGGgCgACGAGGuGGCGCAc -3' miRNA: 3'- caGGGUC---UCCaGgUGCUUCuUCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 6760 | 0.72 | 0.690766 |
Target: 5'- aGUCCCAGGGcGUCCAUGGccAGGAGUa-- -3' miRNA: 3'- -CAGGGUCUC-CAGGUGCU--UCUUCGcgu -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 13909 | 0.66 | 0.948146 |
Target: 5'- -gCgCGGAGGgggCCGCGGAGGccGCGCu -3' miRNA: 3'- caGgGUCUCCa--GGUGCUUCUu-CGCGu -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 17230 | 0.71 | 0.758243 |
Target: 5'- gGUCUCGGAGG-CCGagguGGAGGCGCGc -3' miRNA: 3'- -CAGGGUCUCCaGGUgcu-UCUUCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 28890 | 0.68 | 0.913382 |
Target: 5'- cUCaCGGAGGUCUACGA-GAcgcuGCGCGa -3' miRNA: 3'- cAGgGUCUCCAGGUGCUuCUu---CGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 29634 | 0.72 | 0.720135 |
Target: 5'- -cCCCGGAGGaaCGCGAAGAagacacgcuccgGGCGCu -3' miRNA: 3'- caGGGUCUCCagGUGCUUCU------------UCGCGu -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 33066 | 0.71 | 0.748854 |
Target: 5'- -gCCCAGcGGGUCCAUGAAGAuGGCcuucuGCAc -3' miRNA: 3'- caGGGUC-UCCAGGUGCUUCU-UCG-----CGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 36432 | 0.66 | 0.959681 |
Target: 5'- --gUCGGAGGgCCGCGGAGAcgaguuGCGCu -3' miRNA: 3'- cagGGUCUCCaGGUGCUUCUu-----CGCGu -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 38193 | 0.67 | 0.919032 |
Target: 5'- cUCCCAgugcucgcggucGAGGUCgGgcAGGAGGCGCAg -3' miRNA: 3'- cAGGGU------------CUCCAGgUgcUUCUUCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 39519 | 0.74 | 0.601003 |
Target: 5'- -aUCCAGGGGUCgCGCGGcgAGAgcuGGCGCAg -3' miRNA: 3'- caGGGUCUCCAG-GUGCU--UCU---UCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 40145 | 0.67 | 0.94386 |
Target: 5'- uUUUCAGAGGcaaaCgGCG-AGAAGCGCAg -3' miRNA: 3'- cAGGGUCUCCa---GgUGCuUCUUCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 40343 | 0.68 | 0.905698 |
Target: 5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3' miRNA: 3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 40978 | 0.67 | 0.94386 |
Target: 5'- -cCCCGGGGGgaCGCGGAGGAGgGgGg -3' miRNA: 3'- caGGGUCUCCagGUGCUUCUUCgCgU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 47538 | 0.73 | 0.660977 |
Target: 5'- uGUCCCGGAGGUCguccaugucgaGCGggGAAGacgGCGa -3' miRNA: 3'- -CAGGGUCUCCAGg----------UGCuuCUUCg--CGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 53057 | 0.66 | 0.963098 |
Target: 5'- -gCCCAGcuccucgcgcAGGggCGCGAAGuuGCGCAg -3' miRNA: 3'- caGGGUC----------UCCagGUGCUUCuuCGCGU- -5' |
|||||||
14378 | 3' | -55.8 | NC_003521.1 | + | 53216 | 0.7 | 0.812041 |
Target: 5'- cUCgCCGGGGaGUCCGCGGGcGAAGCGa- -3' miRNA: 3'- cAG-GGUCUC-CAGGUGCUU-CUUCGCgu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home