miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 3' -55.8 NC_003521.1 + 120475 0.67 0.929648
Target:  5'- cGUCCgCAGGuGucUCCGCcGAGAGGCGCGu -3'
miRNA:   3'- -CAGG-GUCUcC--AGGUGcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 134647 0.68 0.901403
Target:  5'- cUCUCggAGAGGUCgCGCagGAAGAAGUGCu -3'
miRNA:   3'- cAGGG--UCUCCAG-GUG--CUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 164813 0.68 0.901403
Target:  5'- aUCCCGGAGcGcCCGCGggGGAGg--- -3'
miRNA:   3'- cAGGGUCUC-CaGGUGCuuCUUCgcgu -5'
14378 3' -55.8 NC_003521.1 + 21 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 240570 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 58861 0.68 0.913382
Target:  5'- -gCCCAGcAGGUaaaggcCCACGAgaGGuGGCGCGg -3'
miRNA:   3'- caGGGUC-UCCA------GGUGCU--UCuUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 28890 0.68 0.913382
Target:  5'- cUCaCGGAGGUCUACGA-GAcgcuGCGCGa -3'
miRNA:   3'- cAGgGUCUCCAGGUGCUuCUu---CGCGU- -5'
14378 3' -55.8 NC_003521.1 + 238421 0.67 0.919032
Target:  5'- cUCCCAgugcucgcggucGAGGUCgGgcAGGAGGCGCAg -3'
miRNA:   3'- cAGGGU------------CUCCAGgUgcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 134198 0.67 0.924454
Target:  5'- -----uGAGGUCguCGGAGAAGCGCu -3'
miRNA:   3'- caggguCUCCAGguGCUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 159829 0.68 0.888536
Target:  5'- -gCCguGAGGcgCUGCGcGGAGGCGCGa -3'
miRNA:   3'- caGGguCUCCa-GGUGCuUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 88897 0.68 0.888536
Target:  5'- -aCCguGAGGcCCACGAgcagAGGAGCGa- -3'
miRNA:   3'- caGGguCUCCaGGUGCU----UCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 230855 0.68 0.881776
Target:  5'- uUCCCgaGGGGGUCagACGggGAcgucauuuuaguGGCGCGc -3'
miRNA:   3'- cAGGG--UCUCCAGg-UGCuuCU------------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 6361 0.8 0.325127
Target:  5'- aUCCCAGAGGggccggucggggUCGCGGAGggGCGCc -3'
miRNA:   3'- cAGGGUCUCCa-----------GGUGCUUCuuCGCGu -5'
14378 3' -55.8 NC_003521.1 + 239746 0.74 0.601003
Target:  5'- -aUCCAGGGGUCgCGCGGcgAGAgcuGGCGCAg -3'
miRNA:   3'- caGGGUCUCCAG-GUGCU--UCU---UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 169043 0.74 0.620982
Target:  5'- cGUCCUGGucGUCCGgGggGAuGCGCAa -3'
miRNA:   3'- -CAGGGUCucCAGGUgCuuCUuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 47538 0.73 0.660977
Target:  5'- uGUCCCGGAGGUCguccaugucgaGCGggGAAGacgGCGa -3'
miRNA:   3'- -CAGGGUCUCCAGg----------UGCuuCUUCg--CGU- -5'
14378 3' -55.8 NC_003521.1 + 29634 0.72 0.720135
Target:  5'- -cCCCGGAGGaaCGCGAAGAagacacgcuccgGGCGCu -3'
miRNA:   3'- caGGGUCUCCagGUGCUUCU------------UCGCGu -5'
14378 3' -55.8 NC_003521.1 + 33066 0.71 0.748854
Target:  5'- -gCCCAGcGGGUCCAUGAAGAuGGCcuucuGCAc -3'
miRNA:   3'- caGGGUC-UCCAGGUGCUUCU-UCG-----CGU- -5'
14378 3' -55.8 NC_003521.1 + 168906 0.7 0.820507
Target:  5'- cGUCCCguAGGGGUagacgugaUGCGAGGAGgGCGCAg -3'
miRNA:   3'- -CAGGG--UCUCCAg-------GUGCUUCUU-CGCGU- -5'
14378 3' -55.8 NC_003521.1 + 228972 0.69 0.852666
Target:  5'- cGUCCgaGGAGGUgCGCG-GGcGGCGCAg -3'
miRNA:   3'- -CAGGg-UCUCCAgGUGCuUCuUCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.