miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 3' -55.8 NC_003521.1 + 181879 0.67 0.929648
Target:  5'- --gCCAGAGGgCCugGuggaguucGAGGCGCAg -3'
miRNA:   3'- cagGGUCUCCaGGugCuu------CUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 120475 0.67 0.929648
Target:  5'- cGUCCgCAGGuGucUCCGCcGAGAGGCGCGu -3'
miRNA:   3'- -CAGG-GUCUcC--AGGUGcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 134198 0.67 0.924454
Target:  5'- -----uGAGGUCguCGGAGAAGCGCu -3'
miRNA:   3'- caggguCUCCAGguGCUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 238421 0.67 0.919032
Target:  5'- cUCCCAgugcucgcggucGAGGUCgGgcAGGAGGCGCAg -3'
miRNA:   3'- cAGGGU------------CUCCAGgUgcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 38193 0.67 0.919032
Target:  5'- cUCCCAgugcucgcggucGAGGUCgGgcAGGAGGCGCAg -3'
miRNA:   3'- cAGGGU------------CUCCAGgUgcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 28890 0.68 0.913382
Target:  5'- cUCaCGGAGGUCUACGA-GAcgcuGCGCGa -3'
miRNA:   3'- cAGgGUCUCCAGGUGCUuCUu---CGCGU- -5'
14378 3' -55.8 NC_003521.1 + 58861 0.68 0.913382
Target:  5'- -gCCCAGcAGGUaaaggcCCACGAgaGGuGGCGCGg -3'
miRNA:   3'- caGGGUC-UCCA------GGUGCU--UCuUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 40343 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 21 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 240570 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 164813 0.68 0.901403
Target:  5'- aUCCCGGAGcGcCCGCGggGGAGg--- -3'
miRNA:   3'- cAGGGUCUC-CaGGUGCuuCUUCgcgu -5'
14378 3' -55.8 NC_003521.1 + 134647 0.68 0.901403
Target:  5'- cUCUCggAGAGGUCgCGCagGAAGAAGUGCu -3'
miRNA:   3'- cAGGG--UCUCCAG-GUG--CUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 155314 0.68 0.894435
Target:  5'- cGUCCUGGgugagacgaccgcGGGUCC-CGGcGGggGCGCGg -3'
miRNA:   3'- -CAGGGUC-------------UCCAGGuGCU-UCuuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 88897 0.68 0.888536
Target:  5'- -aCCguGAGGcCCACGAgcagAGGAGCGa- -3'
miRNA:   3'- caGGguCUCCaGGUGCU----UCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 159829 0.68 0.888536
Target:  5'- -gCCguGAGGcgCUGCGcGGAGGCGCGa -3'
miRNA:   3'- caGGguCUCCa-GGUGCuUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 174208 0.68 0.887869
Target:  5'- -gCCCAcguuGGGGUCgCGCGGgucgggcAGggGCGCGu -3'
miRNA:   3'- caGGGU----CUCCAG-GUGCU-------UCuuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 230855 0.68 0.881776
Target:  5'- uUCCCgaGGGGGUCagACGggGAcgucauuuuaguGGCGCGc -3'
miRNA:   3'- cAGGG--UCUCCAGg-UGCuuCU------------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 157032 0.69 0.874804
Target:  5'- gGUUUCGGGGGcgCgGuCGGAGGAGCGCGg -3'
miRNA:   3'- -CAGGGUCUCCa-GgU-GCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 92292 0.69 0.867625
Target:  5'- cGUCCUcGGGGaaggCgCGgGAGGAGGCGCAg -3'
miRNA:   3'- -CAGGGuCUCCa---G-GUgCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 228972 0.69 0.852666
Target:  5'- cGUCCgaGGAGGUgCGCG-GGcGGCGCAg -3'
miRNA:   3'- -CAGGg-UCUCCAgGUGCuUCuUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.