Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1438 | 3' | -58.1 | NC_001335.1 | + | 4098 | 1.1 | 0.000398 |
Target: 5'- cGGCGGCGAUGCAAAGCAGCUCGGCCGc -3' miRNA: 3'- -CCGCCGCUACGUUUCGUCGAGCCGGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 5550 | 0.76 | 0.126268 |
Target: 5'- gGGCGGCGGUGCcGAGCAGgUagaUGGUCu -3' miRNA: 3'- -CCGCCGCUACGuUUCGUCgA---GCCGGc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 32674 | 0.76 | 0.1298 |
Target: 5'- cGGCGGCGGUGgcCAGcAGCAGuCUCGcGCCc -3' miRNA: 3'- -CCGCCGCUAC--GUU-UCGUC-GAGC-CGGc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 24127 | 0.74 | 0.165925 |
Target: 5'- aGCGGCGGUGCu-GGC-GCUcgCGGCCa -3' miRNA: 3'- cCGCCGCUACGuuUCGuCGA--GCCGGc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 23719 | 0.71 | 0.265791 |
Target: 5'- aGGCGGCGGggguaaagGCAuGGCccuGGCUgaCGGCUGg -3' miRNA: 3'- -CCGCCGCUa-------CGUuUCG---UCGA--GCCGGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 17177 | 0.71 | 0.272568 |
Target: 5'- aGGC-GCGGUGCu--GCAGCUCGcuCCGa -3' miRNA: 3'- -CCGcCGCUACGuuuCGUCGAGCc-GGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 31051 | 0.7 | 0.301066 |
Target: 5'- -uCGGUGA-GCuucuuGCGGUUCGGCCGg -3' miRNA: 3'- ccGCCGCUaCGuuu--CGUCGAGCCGGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 35297 | 0.7 | 0.331809 |
Target: 5'- cGGCGGCuGGUGCGGGaaCAGCuccgggaacaccUCGGCCc -3' miRNA: 3'- -CCGCCG-CUACGUUUc-GUCG------------AGCCGGc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 1181 | 0.7 | 0.331809 |
Target: 5'- aGGCGGgGGuggagcUGCAggGAGCAGCggaggCGGCa- -3' miRNA: 3'- -CCGCCgCU------ACGU--UUCGUCGa----GCCGgc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 16775 | 0.69 | 0.356341 |
Target: 5'- uGCaGGCGAUGgGA--CAGCUCGGCgGu -3' miRNA: 3'- cCG-CCGCUACgUUucGUCGAGCCGgC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 32703 | 0.69 | 0.364797 |
Target: 5'- cGGCGGUGuUGaccuuGGcCAGCacgUCGGCCGg -3' miRNA: 3'- -CCGCCGCuACguu--UC-GUCG---AGCCGGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 9840 | 0.69 | 0.368219 |
Target: 5'- uGGUGGUGAUGCGugaccgcagaggaguAcgcGGCGGCUCaaGCCGc -3' miRNA: 3'- -CCGCCGCUACGU---------------U---UCGUCGAGc-CGGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 22757 | 0.69 | 0.382121 |
Target: 5'- uGGUGGcCGucgGCAcGGUAGUacccUCGGCCGc -3' miRNA: 3'- -CCGCC-GCua-CGUuUCGUCG----AGCCGGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 11056 | 0.69 | 0.382121 |
Target: 5'- aGCGGUGucgcGCucAGCgAGCUUGGCCu -3' miRNA: 3'- cCGCCGCua--CGuuUCG-UCGAGCCGGc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 49393 | 0.69 | 0.390987 |
Target: 5'- cGGCGGCGAgGUuu-GCcGCUacuaCGGCCa -3' miRNA: 3'- -CCGCCGCUaCGuuuCGuCGA----GCCGGc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 16364 | 0.68 | 0.427757 |
Target: 5'- aGCaGGgacucacccCGGUGUuccAGCAGCUCGGCCc -3' miRNA: 3'- cCG-CC---------GCUACGuu-UCGUCGAGCCGGc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 29375 | 0.68 | 0.437265 |
Target: 5'- uGCGGCGAUGCuucaucgcuGAGCcaGGCgauugaUGGCCu -3' miRNA: 3'- cCGCCGCUACGu--------UUCG--UCGa-----GCCGGc -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 2310 | 0.68 | 0.437265 |
Target: 5'- cGCcGCGAggucgGCAAGGagugAGCUgGGCCGg -3' miRNA: 3'- cCGcCGCUa----CGUUUCg---UCGAgCCGGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 9385 | 0.67 | 0.486534 |
Target: 5'- cGGC-GCGuugGUGAAGUuggccAGCUCGGCUGc -3' miRNA: 3'- -CCGcCGCua-CGUUUCG-----UCGAGCCGGC- -5' |
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1438 | 3' | -58.1 | NC_001335.1 | + | 14457 | 0.67 | 0.496705 |
Target: 5'- aGGCGGCGAgucCGAGGUcaagGGCUCcuGGCa- -3' miRNA: 3'- -CCGCCGCUac-GUUUCG----UCGAG--CCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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