Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1438 | 5' | -57 | NC_001335.1 | + | 37686 | 0.66 | 0.5741 |
Target: 5'- uGCAGCCGggacGGGUGuACACCGUgACCgGc -3' miRNA: 3'- cUGUCGGC----UCCAU-UGUGGCG-UGGgUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 50756 | 0.66 | 0.541502 |
Target: 5'- -uCGGCCGGGG--GCGgCGCACCUu- -3' miRNA: 3'- cuGUCGGCUCCauUGUgGCGUGGGua -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 7358 | 0.67 | 0.530768 |
Target: 5'- uGACcaaGGUCGAGGgcuC-CCGCACCCu- -3' miRNA: 3'- -CUG---UCGGCUCCauuGuGGCGUGGGua -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 8373 | 0.68 | 0.435484 |
Target: 5'- aGCGGCCGGguGGUGaugguucgaugacaGCACCGCucCCCGg -3' miRNA: 3'- cUGUCGGCU--CCAU--------------UGUGGCGu-GGGUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 37318 | 0.69 | 0.400393 |
Target: 5'- uGACGGCCacguccuccGGGGUgaacucGACGCCGCGCUUGUa -3' miRNA: 3'- -CUGUCGG---------CUCCA------UUGUGGCGUGGGUA- -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 32842 | 0.69 | 0.391223 |
Target: 5'- aGCAGCCGAGGccgucguCACCGuCGCCgAc -3' miRNA: 3'- cUGUCGGCUCCauu----GUGGC-GUGGgUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 22672 | 0.7 | 0.355941 |
Target: 5'- aGCGGCCGAgGGUAcUACCGUGCCgAc -3' miRNA: 3'- cUGUCGGCU-CCAUuGUGGCGUGGgUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 12920 | 0.7 | 0.322958 |
Target: 5'- cGugAGCgCGAGcGaccGACACCGCGCCCc- -3' miRNA: 3'- -CugUCG-GCUC-Ca--UUGUGGCGUGGGua -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 33850 | 0.72 | 0.244229 |
Target: 5'- uGAUguGGCCGAGGUuGCACgGCuCCCAc -3' miRNA: 3'- -CUG--UCGGCUCCAuUGUGgCGuGGGUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 27670 | 0.72 | 0.244229 |
Target: 5'- uACAGCCGcagcAGGUGcaGCAgCCGCACUCGUa -3' miRNA: 3'- cUGUCGGC----UCCAU--UGU-GGCGUGGGUA- -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 21548 | 0.73 | 0.231753 |
Target: 5'- cGAUAGCCGAGGUcguggaguGACcCCGUucaACCCAg -3' miRNA: 3'- -CUGUCGGCUCCA--------UUGuGGCG---UGGGUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 4132 | 1.05 | 0.001001 |
Target: 5'- cGACAGCCGAGGUAACACCGCACCCAUc -3' miRNA: 3'- -CUGUCGGCUCCAUUGUGGCGUGGGUA- -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 6049 | 0.72 | 0.257257 |
Target: 5'- cGACGGCCacaucGGG-AACGCCGCugCCGg -3' miRNA: 3'- -CUGUCGGc----UCCaUUGUGGCGugGGUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 17227 | 0.67 | 0.499065 |
Target: 5'- cGACcuGGCCGAGGgccguCGCCaGCGCCgGg -3' miRNA: 3'- -CUG--UCGGCUCCauu--GUGG-CGUGGgUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 26874 | 0.67 | 0.520114 |
Target: 5'- -cCAGCuCGAugucuGGUugAGCACCGuCACCCAg -3' miRNA: 3'- cuGUCG-GCU-----CCA--UUGUGGC-GUGGGUa -5' |
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1438 | 5' | -57 | NC_001335.1 | + | 2238 | 0.66 | 0.559908 |
Target: 5'- cGACAGCCG-GGUcaguacGugGCCGUucucugcgacgaacGCCCGa -3' miRNA: 3'- -CUGUCGGCuCCA------UugUGGCG--------------UGGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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