miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14380 3' -54.2 NC_003521.1 + 19945 0.66 0.989374
Target:  5'- gGCGAGaUCGUGGu-GAGGUgGCCGggcuggCGg -3'
miRNA:   3'- -UGCUC-AGCGUCuuCUCUAgCGGCa-----GC- -5'
14380 3' -54.2 NC_003521.1 + 151496 0.66 0.989374
Target:  5'- uGCGAcaUCGCGGAcGGuGAacuacCGCCGUCGg -3'
miRNA:   3'- -UGCUc-AGCGUCU-UCuCUa----GCGGCAGC- -5'
14380 3' -54.2 NC_003521.1 + 94518 0.66 0.989374
Target:  5'- --uGGUCuuGCGGGAGAGAUCGCgGcUCc -3'
miRNA:   3'- ugcUCAG--CGUCUUCUCUAGCGgC-AGc -5'
14380 3' -54.2 NC_003521.1 + 220652 0.66 0.989374
Target:  5'- cGCGA--CGCGGAccGucGUCGCCGUCGu -3'
miRNA:   3'- -UGCUcaGCGUCUu-CucUAGCGGCAGC- -5'
14380 3' -54.2 NC_003521.1 + 224020 0.66 0.989374
Target:  5'- gGCGGGcCcgGCGGucGGGGcgggCGCCGUCGc -3'
miRNA:   3'- -UGCUCaG--CGUCuuCUCUa---GCGGCAGC- -5'
14380 3' -54.2 NC_003521.1 + 72413 0.66 0.989374
Target:  5'- gGCG-GagGCacugaGGAAGAGGgcgaguccUCGCCGUCGu -3'
miRNA:   3'- -UGCuCagCG-----UCUUCUCU--------AGCGGCAGC- -5'
14380 3' -54.2 NC_003521.1 + 94523 0.66 0.989374
Target:  5'- aACGAGgu-UGGAGGAGAcggacguucccuUUGCCGUCGu -3'
miRNA:   3'- -UGCUCagcGUCUUCUCU------------AGCGGCAGC- -5'
14380 3' -54.2 NC_003521.1 + 58078 0.66 0.989374
Target:  5'- -aGAGggcaGCAGAGGAGAguccUCGCC-UUGg -3'
miRNA:   3'- ugCUCag--CGUCUUCUCU----AGCGGcAGC- -5'
14380 3' -54.2 NC_003521.1 + 91327 0.66 0.988001
Target:  5'- cGCGGGggcacgCGCAGgcGAGGU-GCUgGUCGg -3'
miRNA:   3'- -UGCUCa-----GCGUCuuCUCUAgCGG-CAGC- -5'
14380 3' -54.2 NC_003521.1 + 34881 0.66 0.988001
Target:  5'- cCGAGUCGCAGugGAGccAGAagGCCGa-- -3'
miRNA:   3'- uGCUCAGCGUC--UUC--UCUagCGGCagc -5'
14380 3' -54.2 NC_003521.1 + 85829 0.66 0.988001
Target:  5'- cGCGGGugcucaugaucUCGUAGAGGgccaugaccucuGGAUCGCaGUCGg -3'
miRNA:   3'- -UGCUC-----------AGCGUCUUC------------UCUAGCGgCAGC- -5'
14380 3' -54.2 NC_003521.1 + 164795 0.66 0.988001
Target:  5'- cACGGGUCGUcGggGAcGAUC-CCGgagCGc -3'
miRNA:   3'- -UGCUCAGCGuCuuCU-CUAGcGGCa--GC- -5'
14380 3' -54.2 NC_003521.1 + 87387 0.66 0.988001
Target:  5'- gACGAGgcgGCGGAGGuGA-CGCCGaCGc -3'
miRNA:   3'- -UGCUCag-CGUCUUCuCUaGCGGCaGC- -5'
14380 3' -54.2 NC_003521.1 + 172996 0.66 0.988001
Target:  5'- cUGGGUCGCGGGgcucacuugaGGGGAgcaGCCG-CGa -3'
miRNA:   3'- uGCUCAGCGUCU----------UCUCUag-CGGCaGC- -5'
14380 3' -54.2 NC_003521.1 + 238529 0.66 0.987113
Target:  5'- uGCGAGagcucgucggccaGCGGGuAGAGGUgGCCGUCc -3'
miRNA:   3'- -UGCUCag-----------CGUCU-UCUCUAgCGGCAGc -5'
14380 3' -54.2 NC_003521.1 + 38302 0.66 0.987113
Target:  5'- uGCGAGagcucgucggccaGCGGGuAGAGGUgGCCGUCc -3'
miRNA:   3'- -UGCUCag-----------CGUCU-UCUCUAgCGGCAGc -5'
14380 3' -54.2 NC_003521.1 + 76291 0.66 0.986494
Target:  5'- cGCG-GUCGUcGAAGAGcaacgacagcacGUCGCgCGUCa -3'
miRNA:   3'- -UGCuCAGCGuCUUCUC------------UAGCG-GCAGc -5'
14380 3' -54.2 NC_003521.1 + 133222 0.66 0.986494
Target:  5'- cGCGGGUU-CAGggGcGAUgGCgGUCGa -3'
miRNA:   3'- -UGCUCAGcGUCuuCuCUAgCGgCAGC- -5'
14380 3' -54.2 NC_003521.1 + 167661 0.66 0.986494
Target:  5'- cGCGccaGGUCGCAGGccGAGGcggCGCCGcCGc -3'
miRNA:   3'- -UGC---UCAGCGUCUu-CUCUa--GCGGCaGC- -5'
14380 3' -54.2 NC_003521.1 + 212653 0.66 0.986494
Target:  5'- uGCGAcccgaagagggcGUCGCGGGcauGGUCGCCGcCGu -3'
miRNA:   3'- -UGCU------------CAGCGUCUucuCUAGCGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.