miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14380 5' -55.2 NC_003521.1 + 186794 0.66 0.983167
Target:  5'- -gCGGCGGCGggggcaagaagcacgGCGGUUCCAgc-UCGCg -3'
miRNA:   3'- ugGCUGCCGC---------------UGCUAGGGUguuAGCG- -5'
14380 5' -55.2 NC_003521.1 + 123338 0.66 0.983167
Target:  5'- cACCGACGGCcccagcgccgcggccGugGccUCCgACAGcCGCa -3'
miRNA:   3'- -UGGCUGCCG---------------CugCu-AGGgUGUUaGCG- -5'
14380 5' -55.2 NC_003521.1 + 223004 0.66 0.982419
Target:  5'- -aUGGCGGUGGgGGUCgucguCCGcCGGUCGCa -3'
miRNA:   3'- ugGCUGCCGCUgCUAG-----GGU-GUUAGCG- -5'
14380 5' -55.2 NC_003521.1 + 193682 0.66 0.982419
Target:  5'- aGCgCGGCGGCGucuauugcuACGAUgaccUCCACGAcUGCg -3'
miRNA:   3'- -UG-GCUGCCGC---------UGCUA----GGGUGUUaGCG- -5'
14380 5' -55.2 NC_003521.1 + 37165 0.66 0.982419
Target:  5'- uGCUGACGGaCGACcacaaGUCUCGCGAccUGCa -3'
miRNA:   3'- -UGGCUGCC-GCUGc----UAGGGUGUUa-GCG- -5'
14380 5' -55.2 NC_003521.1 + 208947 0.66 0.982419
Target:  5'- gGCCuGGCGGUG-CGGUaCCGC--UCGCa -3'
miRNA:   3'- -UGG-CUGCCGCuGCUAgGGUGuuAGCG- -5'
14380 5' -55.2 NC_003521.1 + 7092 0.66 0.982419
Target:  5'- gACgCGGCGGCGGCGuccUCCUucucCAGgcCGCu -3'
miRNA:   3'- -UG-GCUGCCGCUGCu--AGGGu---GUUa-GCG- -5'
14380 5' -55.2 NC_003521.1 + 148589 0.66 0.982419
Target:  5'- gACCGcGCGGCGcccguCGggCCCucACAgcgcucGUCGCg -3'
miRNA:   3'- -UGGC-UGCCGCu----GCuaGGG--UGU------UAGCG- -5'
14380 5' -55.2 NC_003521.1 + 222080 0.66 0.982419
Target:  5'- cCCGuCGGCGccacCGccgCCACGAUCGCc -3'
miRNA:   3'- uGGCuGCCGCu---GCuagGGUGUUAGCG- -5'
14380 5' -55.2 NC_003521.1 + 238597 0.66 0.982419
Target:  5'- -aCGACGGCGACuGUCCgUACAAa--- -3'
miRNA:   3'- ugGCUGCCGCUGcUAGG-GUGUUagcg -5'
14380 5' -55.2 NC_003521.1 + 98537 0.66 0.982419
Target:  5'- gGCCGcugcaGCGGCGGCGgGUCCCAgccCGAgccCGa -3'
miRNA:   3'- -UGGC-----UGCCGCUGC-UAGGGU---GUUa--GCg -5'
14380 5' -55.2 NC_003521.1 + 163305 0.66 0.982419
Target:  5'- -gCGACGGCGug---UCCACGGUCaGCg -3'
miRNA:   3'- ugGCUGCCGCugcuaGGGUGUUAG-CG- -5'
14380 5' -55.2 NC_003521.1 + 42614 0.66 0.982419
Target:  5'- gGCCGcCGGCGGCGccGUCgCCGCcAUgGa -3'
miRNA:   3'- -UGGCuGCCGCUGC--UAG-GGUGuUAgCg -5'
14380 5' -55.2 NC_003521.1 + 5530 0.66 0.982419
Target:  5'- -gCGACGGUGACGGcagCCggCGCGGcCGCc -3'
miRNA:   3'- ugGCUGCCGCUGCUa--GG--GUGUUaGCG- -5'
14380 5' -55.2 NC_003521.1 + 132381 0.66 0.981249
Target:  5'- aGCCaGACGGUgaugcagacagacggGGCGGggUCCCuGCAAUgGCa -3'
miRNA:   3'- -UGG-CUGCCG---------------CUGCU--AGGG-UGUUAgCG- -5'
14380 5' -55.2 NC_003521.1 + 15311 0.66 0.981249
Target:  5'- cGCgCGACGGCGccgagcgggugaucaGCGcgCUggugcaGCAGUCGCg -3'
miRNA:   3'- -UG-GCUGCCGC---------------UGCuaGGg-----UGUUAGCG- -5'
14380 5' -55.2 NC_003521.1 + 38942 0.66 0.980438
Target:  5'- cAUCGGCGGUGugGua-CCugAGUCa- -3'
miRNA:   3'- -UGGCUGCCGCugCuagGGugUUAGcg -5'
14380 5' -55.2 NC_003521.1 + 49176 0.66 0.980438
Target:  5'- gGCUGAUccGUGACGAUuagcgaauuggCCCGCAgcgaGUCGCg -3'
miRNA:   3'- -UGGCUGc-CGCUGCUA-----------GGGUGU----UAGCG- -5'
14380 5' -55.2 NC_003521.1 + 156163 0.66 0.980438
Target:  5'- -aCGACGGUGGCGAggcggaggagaCCCACGAcaUCcccuGCa -3'
miRNA:   3'- ugGCUGCCGCUGCUa----------GGGUGUU--AG----CG- -5'
14380 5' -55.2 NC_003521.1 + 18873 0.66 0.980438
Target:  5'- uGCCGuACGGCGACcg-CCUggACGuGUCGUg -3'
miRNA:   3'- -UGGC-UGCCGCUGcuaGGG--UGU-UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.