miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14382 3' -62.6 NC_003521.1 + 240457 0.66 0.745127
Target:  5'- aGGCG-GGCagcGGUCGCAGgCgCCGcCUCc -3'
miRNA:   3'- aCCGCgCCGc--UCAGCGUC-G-GGCaGAG- -5'
14382 3' -62.6 NC_003521.1 + 110650 0.66 0.745127
Target:  5'- gGGCGcCGGCacGGUCaCGGCCCgGUCg- -3'
miRNA:   3'- aCCGC-GCCGc-UCAGcGUCGGG-CAGag -5'
14382 3' -62.6 NC_003521.1 + 135821 0.66 0.745127
Target:  5'- aGGCGCGGCGAcgaaCGCu-CCCGUg-- -3'
miRNA:   3'- aCCGCGCCGCUca--GCGucGGGCAgag -5'
14382 3' -62.6 NC_003521.1 + 196414 0.66 0.745127
Target:  5'- gGGCaGCGGCacagacAGUCGCugucGCCCGggUCg -3'
miRNA:   3'- aCCG-CGCCGc-----UCAGCGu---CGGGCagAG- -5'
14382 3' -62.6 NC_003521.1 + 186627 0.66 0.745127
Target:  5'- cGGCgGCGGUG-GUgGCGGCaaGUCg- -3'
miRNA:   3'- aCCG-CGCCGCuCAgCGUCGggCAGag -5'
14382 3' -62.6 NC_003521.1 + 124483 0.66 0.745127
Target:  5'- cGG-GCGGCuGGUCGUAGCgCGUg-- -3'
miRNA:   3'- aCCgCGCCGcUCAGCGUCGgGCAgag -5'
14382 3' -62.6 NC_003521.1 + 40229 0.66 0.745127
Target:  5'- aGGCG-GGCagcGGUCGCAGgCgCCGcCUCc -3'
miRNA:   3'- aCCGCgCCGc--UCAGCGUC-G-GGCaGAG- -5'
14382 3' -62.6 NC_003521.1 + 117014 0.66 0.743318
Target:  5'- cGGCGUGacggagcGCGAGUCGUacgucaaGGCCaguGUUUCg -3'
miRNA:   3'- aCCGCGC-------CGCUCAGCG-------UCGGg--CAGAG- -5'
14382 3' -62.6 NC_003521.1 + 104819 0.66 0.736047
Target:  5'- aGGCGUacaGCGAGU-GCAGCUgGaUCUCc -3'
miRNA:   3'- aCCGCGc--CGCUCAgCGUCGGgC-AGAG- -5'
14382 3' -62.6 NC_003521.1 + 19065 0.66 0.736047
Target:  5'- cGGCGCGGCGcAGaCGCuGaCgCUGUCg- -3'
miRNA:   3'- aCCGCGCCGC-UCaGCGuC-G-GGCAGag -5'
14382 3' -62.6 NC_003521.1 + 152907 0.66 0.726889
Target:  5'- cGGCGCGGCGgccagccaggAGUCGUuGCUCaaGUC-Ca -3'
miRNA:   3'- aCCGCGCCGC----------UCAGCGuCGGG--CAGaG- -5'
14382 3' -62.6 NC_003521.1 + 178019 0.66 0.726889
Target:  5'- cGGagGCGGCcacGGUCGUcaaagacgccgGGCCCGUCa- -3'
miRNA:   3'- aCCg-CGCCGc--UCAGCG-----------UCGGGCAGag -5'
14382 3' -62.6 NC_003521.1 + 183129 0.66 0.726889
Target:  5'- cGGuUGCGGCG-GUCGCAucCCCGUg-- -3'
miRNA:   3'- aCC-GCGCCGCuCAGCGUc-GGGCAgag -5'
14382 3' -62.6 NC_003521.1 + 177398 0.66 0.725969
Target:  5'- cGGCgauauacGCGGCGGGcCGCuucCCCGUaaaCUCg -3'
miRNA:   3'- aCCG-------CGCCGCUCaGCGuc-GGGCA---GAG- -5'
14382 3' -62.6 NC_003521.1 + 16723 0.66 0.724127
Target:  5'- -uGCGCGGCGAGUucggcgaccgccggCGCGcgcGCCCGcCg- -3'
miRNA:   3'- acCGCGCCGCUCA--------------GCGU---CGGGCaGag -5'
14382 3' -62.6 NC_003521.1 + 165994 0.66 0.717659
Target:  5'- aGGCGCGG-GAcgccGUCGCgcucGGCgCCGUC-Cg -3'
miRNA:   3'- aCCGCGCCgCU----CAGCG----UCG-GGCAGaG- -5'
14382 3' -62.6 NC_003521.1 + 214822 0.66 0.712091
Target:  5'- gGGCGCGGCGAcggcgguuccaugcuGuUUGCuGCCCGg--- -3'
miRNA:   3'- aCCGCGCCGCU---------------C-AGCGuCGGGCagag -5'
14382 3' -62.6 NC_003521.1 + 142651 0.66 0.708366
Target:  5'- cGGCcucaGCGGUcGG-CGCAGCgCCGUCa- -3'
miRNA:   3'- aCCG----CGCCGcUCaGCGUCG-GGCAGag -5'
14382 3' -62.6 NC_003521.1 + 150569 0.66 0.708366
Target:  5'- gUGGCgGCGGCGGcggCGCGGCUCcucCUCc -3'
miRNA:   3'- -ACCG-CGCCGCUca-GCGUCGGGca-GAG- -5'
14382 3' -62.6 NC_003521.1 + 111216 0.66 0.708366
Target:  5'- aUGGCGCcggaaagugGGCGAcacgggucacaaGUCGCGccCCCGUCUa -3'
miRNA:   3'- -ACCGCG---------CCGCU------------CAGCGUc-GGGCAGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.