miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14382 5' -60.5 NC_003521.1 + 18700 0.66 0.797739
Target:  5'- -aGAGCucauucuucCCGGcGCaGCGCCUCGAGa -3'
miRNA:   3'- uaCUCGcua------GGCC-CGaCGCGGAGCUU- -5'
14382 5' -60.5 NC_003521.1 + 141091 0.66 0.797739
Target:  5'- aAUGAGCGG-CUGGG-UGCGCgaCGAc -3'
miRNA:   3'- -UACUCGCUaGGCCCgACGCGgaGCUu -5'
14382 5' -60.5 NC_003521.1 + 178879 0.66 0.762137
Target:  5'- -aGAGCGAggCCGccuGUUGCGUCUUGAGa -3'
miRNA:   3'- uaCUCGCUa-GGCc--CGACGCGGAGCUU- -5'
14382 5' -60.5 NC_003521.1 + 120553 0.66 0.75295
Target:  5'- --cGGCGGUCCcgGGGgaGCGCC-CGGGg -3'
miRNA:   3'- uacUCGCUAGG--CCCgaCGCGGaGCUU- -5'
14382 5' -60.5 NC_003521.1 + 187624 0.66 0.75295
Target:  5'- -cGGGCGAgCCGGGCcgcGCGCCg---- -3'
miRNA:   3'- uaCUCGCUaGGCCCGa--CGCGGagcuu -5'
14382 5' -60.5 NC_003521.1 + 139844 0.67 0.747391
Target:  5'- -cGAGCGAgaacgccgugcgcgCCGGGCacgGCGCUUCu-- -3'
miRNA:   3'- uaCUCGCUa-------------GGCCCGa--CGCGGAGcuu -5'
14382 5' -60.5 NC_003521.1 + 160280 0.67 0.743666
Target:  5'- cAUGAGCGGcCUGGGCUcCGCCggcaaggCGGu -3'
miRNA:   3'- -UACUCGCUaGGCCCGAcGCGGa------GCUu -5'
14382 5' -60.5 NC_003521.1 + 17082 0.67 0.743666
Target:  5'- aGUGGGagGAUuuGGGCUuCGaCCUCGAGg -3'
miRNA:   3'- -UACUCg-CUAggCCCGAcGC-GGAGCUU- -5'
14382 5' -60.5 NC_003521.1 + 113575 0.67 0.724833
Target:  5'- -gGAcGCGGUg-GGGCUGgGCCUCGGGg -3'
miRNA:   3'- uaCU-CGCUAggCCCGACgCGGAGCUU- -5'
14382 5' -60.5 NC_003521.1 + 137920 0.67 0.724833
Target:  5'- uUGAGCGcUCCcugucGGGCgugcUGCGCCUCu-- -3'
miRNA:   3'- uACUCGCuAGG-----CCCG----ACGCGGAGcuu -5'
14382 5' -60.5 NC_003521.1 + 224028 0.67 0.705705
Target:  5'- --cGGCGGUCgGGGCggGCGCCgUCGc- -3'
miRNA:   3'- uacUCGCUAGgCCCGa-CGCGG-AGCuu -5'
14382 5' -60.5 NC_003521.1 + 29680 0.67 0.705705
Target:  5'- cAUGGGCGA-CUGGaggaugauccGCUGCGuCCUCGGc -3'
miRNA:   3'- -UACUCGCUaGGCC----------CGACGC-GGAGCUu -5'
14382 5' -60.5 NC_003521.1 + 174303 0.67 0.696052
Target:  5'- --cGGCGAUCUuguccaGCUGCGCCUUGAAa -3'
miRNA:   3'- uacUCGCUAGGcc----CGACGCGGAGCUU- -5'
14382 5' -60.5 NC_003521.1 + 36684 0.68 0.686348
Target:  5'- -cGAGCuGAggCCGGGCUccgGCGCCUggccCGAGc -3'
miRNA:   3'- uaCUCG-CUa-GGCCCGA---CGCGGA----GCUU- -5'
14382 5' -60.5 NC_003521.1 + 99934 0.68 0.666825
Target:  5'- -aGGGCGuaAUCCcgcacgcagggGGGCggcgGCGCCUCGGc -3'
miRNA:   3'- uaCUCGC--UAGG-----------CCCGa---CGCGGAGCUu -5'
14382 5' -60.5 NC_003521.1 + 105017 0.68 0.666824
Target:  5'- -gGAGCGGgaaCGGGa-GCGCUUCGAGg -3'
miRNA:   3'- uaCUCGCUag-GCCCgaCGCGGAGCUU- -5'
14382 5' -60.5 NC_003521.1 + 126715 0.68 0.65702
Target:  5'- gGUGAGCaGAUCCGaGGCgGCGCggUCGGc -3'
miRNA:   3'- -UACUCG-CUAGGC-CCGaCGCGg-AGCUu -5'
14382 5' -60.5 NC_003521.1 + 191087 0.69 0.61769
Target:  5'- gGUG-GCGGcggCGGGCUGCGUCUCGu- -3'
miRNA:   3'- -UACuCGCUag-GCCCGACGCGGAGCuu -5'
14382 5' -60.5 NC_003521.1 + 146822 0.7 0.559121
Target:  5'- -cGAGCGcuccgccuGUCUGGGggGCGCCUCGu- -3'
miRNA:   3'- uaCUCGC--------UAGGCCCgaCGCGGAGCuu -5'
14382 5' -60.5 NC_003521.1 + 224445 0.7 0.530387
Target:  5'- -cGAGCGGUCCaGG-UGCGUCUUGAc -3'
miRNA:   3'- uaCUCGCUAGGcCCgACGCGGAGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.