miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 16747 0.66 0.990632
Target:  5'- -gGCGCGCGCgccc-GCCGGagGACGa -3'
miRNA:   3'- gaUGUGCGUGauaccCGGCCagUUGC- -5'
14384 3' -53.7 NC_003521.1 + 171283 0.66 0.990632
Target:  5'- cCUGCGCuGUAUccgcGUGGGCUGGaaGGCGg -3'
miRNA:   3'- -GAUGUG-CGUGa---UACCCGGCCagUUGC- -5'
14384 3' -53.7 NC_003521.1 + 73829 0.66 0.990632
Target:  5'- cCUGgACGCGCUGacGGCCGagggaacgacGUCAACc -3'
miRNA:   3'- -GAUgUGCGUGAUacCCGGC----------CAGUUGc -5'
14384 3' -53.7 NC_003521.1 + 57574 0.66 0.990632
Target:  5'- -cGCGCGC-CUucgagGGcGCCGG-CGGCGa -3'
miRNA:   3'- gaUGUGCGuGAua---CC-CGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 45669 0.66 0.989374
Target:  5'- -cACACcCGCUAUcagGGGCCGGaCAccgaGCGg -3'
miRNA:   3'- gaUGUGcGUGAUA---CCCGGCCaGU----UGC- -5'
14384 3' -53.7 NC_003521.1 + 202550 0.66 0.988558
Target:  5'- gCUGCGCGCcggccuccuggggcuGCUGacccUGGGCCGcGUCu-CGc -3'
miRNA:   3'- -GAUGUGCG---------------UGAU----ACCCGGC-CAGuuGC- -5'
14384 3' -53.7 NC_003521.1 + 19863 0.66 0.987987
Target:  5'- gCUGCAgCGCucccuGCUGacGGCCGcGUCGGCGc -3'
miRNA:   3'- -GAUGU-GCG-----UGAUacCCGGC-CAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 59711 0.66 0.987987
Target:  5'- aCUGC-CGCGCcGUGGccgaGCUGGUgGACa -3'
miRNA:   3'- -GAUGuGCGUGaUACC----CGGCCAgUUGc -5'
14384 3' -53.7 NC_003521.1 + 26308 0.66 0.987987
Target:  5'- --cCACGCGCUGUccgcgcuuccaGGGCCGGcUCucCa -3'
miRNA:   3'- gauGUGCGUGAUA-----------CCCGGCC-AGuuGc -5'
14384 3' -53.7 NC_003521.1 + 13622 0.66 0.987987
Target:  5'- -gGCGCGagGCUAuaaacUGGGCUGGgaagggCGGCGg -3'
miRNA:   3'- gaUGUGCg-UGAU-----ACCCGGCCa-----GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 162882 0.66 0.987987
Target:  5'- -gGCGCGCGCagGUGGGCCGcu--ACu -3'
miRNA:   3'- gaUGUGCGUGa-UACCCGGCcaguUGc -5'
14384 3' -53.7 NC_003521.1 + 92251 0.66 0.987987
Target:  5'- -cGCGCGguCUuuuGGCCGGUC-GCGu -3'
miRNA:   3'- gaUGUGCguGAuacCCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 115366 0.66 0.986465
Target:  5'- -cACGCGuCGCUGgccaGGGCCGG-CAuguGCa -3'
miRNA:   3'- gaUGUGC-GUGAUa---CCCGGCCaGU---UGc -5'
14384 3' -53.7 NC_003521.1 + 39881 0.66 0.986465
Target:  5'- gUGCACGUugggGUGGGCgugCGGUCGucccgGCGg -3'
miRNA:   3'- gAUGUGCGuga-UACCCG---GCCAGU-----UGC- -5'
14384 3' -53.7 NC_003521.1 + 240108 0.66 0.986465
Target:  5'- gUGCACGUugggGUGGGCgugCGGUCGucccgGCGg -3'
miRNA:   3'- gAUGUGCGuga-UACCCG---GCCAGU-----UGC- -5'
14384 3' -53.7 NC_003521.1 + 128086 0.66 0.984798
Target:  5'- -aGCACGCAgUcGUaGGCCGGguaGACGg -3'
miRNA:   3'- gaUGUGCGUgA-UAcCCGGCCag-UUGC- -5'
14384 3' -53.7 NC_003521.1 + 145847 0.67 0.98298
Target:  5'- aCUAUuaACGCGuCUcUGGGCCcGG-CGGCGg -3'
miRNA:   3'- -GAUG--UGCGU-GAuACCCGG-CCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 111195 0.67 0.98298
Target:  5'- --cCGCGgACgGUGGGCUGGgCGAUGg -3'
miRNA:   3'- gauGUGCgUGaUACCCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 117395 0.67 0.98298
Target:  5'- -gGCACGCGCUGUGcuGGCaccgGGUgGAgGg -3'
miRNA:   3'- gaUGUGCGUGAUAC--CCGg---CCAgUUgC- -5'
14384 3' -53.7 NC_003521.1 + 37314 0.67 0.98298
Target:  5'- uCUGCACGUcuccuCUGggugGGGgCGGUCG-CGg -3'
miRNA:   3'- -GAUGUGCGu----GAUa---CCCgGCCAGUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.