miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 59846 1.1 0.007112
Target:  5'- uCUACACGCACUAUGGGCCGGUCAACGg -3'
miRNA:   3'- -GAUGUGCGUGAUACCCGGCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 167620 0.78 0.555541
Target:  5'- -cGCAgGCGCUcgGGGUCGGUC-ACGu -3'
miRNA:   3'- gaUGUgCGUGAuaCCCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 98523 0.76 0.655634
Target:  5'- -gACGCGCGCggcUGGGCCGcugCAGCGg -3'
miRNA:   3'- gaUGUGCGUGau-ACCCGGCca-GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 175815 0.75 0.695575
Target:  5'- aUGCGCGUGCUAgGGGCgCGGUCcaagaAGCGg -3'
miRNA:   3'- gAUGUGCGUGAUaCCCG-GCCAG-----UUGC- -5'
14384 3' -53.7 NC_003521.1 + 106546 0.73 0.772432
Target:  5'- gCUGaaaGCGCGa-GUGGGCCGGUC-GCGa -3'
miRNA:   3'- -GAUg--UGCGUgaUACCCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 197482 0.73 0.781586
Target:  5'- --uCACGCGCggcGGGCCGGaCGGCGc -3'
miRNA:   3'- gauGUGCGUGauaCCCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 196320 0.71 0.864674
Target:  5'- aUGCA-GCGC-AUGGGCCGGUUguuGCGc -3'
miRNA:   3'- gAUGUgCGUGaUACCCGGCCAGu--UGC- -5'
14384 3' -53.7 NC_003521.1 + 154749 0.71 0.871976
Target:  5'- uCUGCugGC-CUAcuGGCCGGUCAuCGc -3'
miRNA:   3'- -GAUGugCGuGAUacCCGGCCAGUuGC- -5'
14384 3' -53.7 NC_003521.1 + 166277 0.71 0.885953
Target:  5'- -cACGCGCACggcGcGGCUGGUCcGCGu -3'
miRNA:   3'- gaUGUGCGUGauaC-CCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 6343 0.7 0.90467
Target:  5'- -aACGCGCGCcagAUccggaucccagagGGGCCGGUCGgggucGCGg -3'
miRNA:   3'- gaUGUGCGUGa--UA-------------CCCGGCCAGU-----UGC- -5'
14384 3' -53.7 NC_003521.1 + 124278 0.7 0.911275
Target:  5'- uCUGCGgGCGCgagaGGGCUGGcUCAGCc -3'
miRNA:   3'- -GAUGUgCGUGaua-CCCGGCC-AGUUGc -5'
14384 3' -53.7 NC_003521.1 + 139861 0.7 0.91704
Target:  5'- uCUGCACGaACUGcGGGUcgcgguacagcuCGGUCAGCGc -3'
miRNA:   3'- -GAUGUGCgUGAUaCCCG------------GCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 68801 0.7 0.922575
Target:  5'- cCUGCGCGCcguccggauagACUugcGGGCCcuggcacagucGGUCAACGa -3'
miRNA:   3'- -GAUGUGCG-----------UGAua-CCCGG-----------CCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 101802 0.7 0.922575
Target:  5'- -gGCGCGCACgaagcccagGGGgCGGUCG-CGg -3'
miRNA:   3'- gaUGUGCGUGaua------CCCgGCCAGUuGC- -5'
14384 3' -53.7 NC_003521.1 + 177719 0.7 0.927878
Target:  5'- uCUGCugGUACUGcuggaGGGCgGG-CAGCGc -3'
miRNA:   3'- -GAUGugCGUGAUa----CCCGgCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 100582 0.7 0.927878
Target:  5'- uUAC-CGC-CguagGGGCCGGUgGACGa -3'
miRNA:   3'- gAUGuGCGuGaua-CCCGGCCAgUUGC- -5'
14384 3' -53.7 NC_003521.1 + 56091 0.69 0.942404
Target:  5'- gUGCACGcCACUGacGGGUaCGGUCuGCGa -3'
miRNA:   3'- gAUGUGC-GUGAUa-CCCG-GCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 112803 0.69 0.942404
Target:  5'- -gGCACGCGCUcUGGGaCGGccgCGACc -3'
miRNA:   3'- gaUGUGCGUGAuACCCgGCCa--GUUGc -5'
14384 3' -53.7 NC_003521.1 + 123964 0.69 0.946788
Target:  5'- aCUGCGCGCGCa---GGUcgucgCGGUCGGCGg -3'
miRNA:   3'- -GAUGUGCGUGauacCCG-----GCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 70646 0.69 0.946788
Target:  5'- -cACACGCACgcUGcGGCUGGUgcugCAGCu -3'
miRNA:   3'- gaUGUGCGUGauAC-CCGGCCA----GUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.