Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14384 | 3' | -53.7 | NC_003521.1 | + | 77733 | 0.69 | 0.950946 |
Target: 5'- -cGCugGCGCccgaggacGGGCCGGccUCGGCGu -3' miRNA: 3'- gaUGugCGUGaua-----CCCGGCC--AGUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 74116 | 0.68 | 0.954881 |
Target: 5'- -aGCugGCugUGgccGCUGGUCAACGc -3' miRNA: 3'- gaUGugCGugAUaccCGGCCAGUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 86716 | 0.68 | 0.954881 |
Target: 5'- -gGC-CGCGagAUGGGCCGGUUcuuGACGc -3' miRNA: 3'- gaUGuGCGUgaUACCCGGCCAG---UUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 145946 | 0.68 | 0.954881 |
Target: 5'- -aACACGCccgaGCUGcUGGGCCGccUCAACa -3' miRNA: 3'- gaUGUGCG----UGAU-ACCCGGCc-AGUUGc -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 37352 | 0.68 | 0.954881 |
Target: 5'- -cGCACGUAUccgccGGGaCUGGUCGGCGa -3' miRNA: 3'- gaUGUGCGUGaua--CCC-GGCCAGUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 209061 | 0.68 | 0.954881 |
Target: 5'- -gACugGCGCgaccccgAUGuGCCGGUCGagGCGg -3' miRNA: 3'- gaUGugCGUGa------UACcCGGCCAGU--UGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 116870 | 0.68 | 0.958596 |
Target: 5'- cCUGCGCGCGCaGUGG-CgCGGcugCGGCGg -3' miRNA: 3'- -GAUGUGCGUGaUACCcG-GCCa--GUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 136071 | 0.68 | 0.958596 |
Target: 5'- gCUGCGCGCucaucuccacGCUGgaGGGCuCGGUguGCGu -3' miRNA: 3'- -GAUGUGCG----------UGAUa-CCCG-GCCAguUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 16451 | 0.68 | 0.961755 |
Target: 5'- uCUACACGaGCUGUuccGGGCCGGccUCAugaaggucuacguGCGg -3' miRNA: 3'- -GAUGUGCgUGAUA---CCCGGCC--AGU-------------UGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 128277 | 0.68 | 0.962096 |
Target: 5'- -aGCGCGUugcggAUGGuGUCGGUCAGCu -3' miRNA: 3'- gaUGUGCGuga--UACC-CGGCCAGUUGc -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 150913 | 0.68 | 0.962096 |
Target: 5'- aCUGCGCGCccuuccacgGCgUGUGGGCCgagcgcGGUCAGa- -3' miRNA: 3'- -GAUGUGCG---------UG-AUACCCGG------CCAGUUgc -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 73019 | 0.68 | 0.965385 |
Target: 5'- -gACAUGCGCgGUGGuGCUGGcUGACGg -3' miRNA: 3'- gaUGUGCGUGaUACC-CGGCCaGUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 154650 | 0.68 | 0.965385 |
Target: 5'- -aGCACGUgccGCUGgccGaGGCCGG-CAGCGa -3' miRNA: 3'- gaUGUGCG---UGAUa--C-CCGGCCaGUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 127307 | 0.68 | 0.965385 |
Target: 5'- -gGCGCGC-CUcgauguUGGcGuuGGUCAGCGg -3' miRNA: 3'- gaUGUGCGuGAu-----ACC-CggCCAGUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 2445 | 0.68 | 0.969645 |
Target: 5'- cCUGCACGUucauccccgcgccccGCUAUGGguacgcgacggcGCCGGcCAGCu -3' miRNA: 3'- -GAUGUGCG---------------UGAUACC------------CGGCCaGUUGc -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 138035 | 0.67 | 0.971351 |
Target: 5'- gCUGCcgGCGCACg--GGGCUgugGGUCGcccGCGa -3' miRNA: 3'- -GAUG--UGCGUGauaCCCGG---CCAGU---UGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 136866 | 0.67 | 0.974039 |
Target: 5'- aUGCACGgACUcgcggcggGUGGcGCCGGUguucgcggucgaCAACGa -3' miRNA: 3'- gAUGUGCgUGA--------UACC-CGGCCA------------GUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 125247 | 0.67 | 0.974039 |
Target: 5'- -gACGCGCACg--GGGgCGaGaUCAACGu -3' miRNA: 3'- gaUGUGCGUGauaCCCgGC-C-AGUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 104007 | 0.67 | 0.974039 |
Target: 5'- gUACAUGCGCacgccgGGGUC-GUCGGCGg -3' miRNA: 3'- gAUGUGCGUGaua---CCCGGcCAGUUGC- -5' |
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14384 | 3' | -53.7 | NC_003521.1 | + | 2322 | 0.67 | 0.975061 |
Target: 5'- gCUGCGCGCcggccuccuggggcuGCUGacccUGGGCCGcGUCucCGc -3' miRNA: 3'- -GAUGUGCG---------------UGAU----ACCCGGC-CAGuuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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