miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 99031 0.67 0.981813
Target:  5'- ---gGCGCcgGCUccGGGCCGGUCcgagguagggacuuuGACGa -3'
miRNA:   3'- gaugUGCG--UGAuaCCCGGCCAG---------------UUGC- -5'
14384 3' -53.7 NC_003521.1 + 137577 0.67 0.981613
Target:  5'- gUGCACGCGCgaaccguuauucuUGGGCCgccgccuGGcCGGCGa -3'
miRNA:   3'- gAUGUGCGUGau-----------ACCCGG-------CCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 59054 0.67 0.981003
Target:  5'- aCUAcCGgGCGCUGUGGGCCuucucccuGGUgAucuGCGg -3'
miRNA:   3'- -GAU-GUgCGUGAUACCCGG--------CCAgU---UGC- -5'
14384 3' -53.7 NC_003521.1 + 122686 0.67 0.981003
Target:  5'- -aGCAcCGacaGCUGcgGGGCCGGUCGGu- -3'
miRNA:   3'- gaUGU-GCg--UGAUa-CCCGGCCAGUUgc -5'
14384 3' -53.7 NC_003521.1 + 143536 0.67 0.981003
Target:  5'- -cGCACGCGCgcc--GCCGG-CGACGa -3'
miRNA:   3'- gaUGUGCGUGauaccCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 162245 0.67 0.981003
Target:  5'- -cGCugGCGggGUGGGC--GUCAACGg -3'
miRNA:   3'- gaUGugCGUgaUACCCGgcCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 149407 0.67 0.978858
Target:  5'- -cGCAUGCGCacggucgcccUGUGGGCCGGgauuugggUCGGgGg -3'
miRNA:   3'- gaUGUGCGUG----------AUACCCGGCC--------AGUUgC- -5'
14384 3' -53.7 NC_003521.1 + 173031 0.67 0.978858
Target:  5'- -aGCACGCGCUc---GCCGGUgGGCa -3'
miRNA:   3'- gaUGUGCGUGAuaccCGGCCAgUUGc -5'
14384 3' -53.7 NC_003521.1 + 2322 0.67 0.975061
Target:  5'- gCUGCGCGCcggccuccuggggcuGCUGacccUGGGCCGcGUCucCGc -3'
miRNA:   3'- -GAUGUGCG---------------UGAU----ACCCGGC-CAGuuGC- -5'
14384 3' -53.7 NC_003521.1 + 136866 0.67 0.974039
Target:  5'- aUGCACGgACUcgcggcggGUGGcGCCGGUguucgcggucgaCAACGa -3'
miRNA:   3'- gAUGUGCgUGA--------UACC-CGGCCA------------GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 125247 0.67 0.974039
Target:  5'- -gACGCGCACg--GGGgCGaGaUCAACGu -3'
miRNA:   3'- gaUGUGCGUGauaCCCgGC-C-AGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 104007 0.67 0.974039
Target:  5'- gUACAUGCGCacgccgGGGUC-GUCGGCGg -3'
miRNA:   3'- gAUGUGCGUGaua---CCCGGcCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 138035 0.67 0.971351
Target:  5'- gCUGCcgGCGCACg--GGGCUgugGGUCGcccGCGa -3'
miRNA:   3'- -GAUG--UGCGUGauaCCCGG---CCAGU---UGC- -5'
14384 3' -53.7 NC_003521.1 + 2445 0.68 0.969645
Target:  5'- cCUGCACGUucauccccgcgccccGCUAUGGguacgcgacggcGCCGGcCAGCu -3'
miRNA:   3'- -GAUGUGCG---------------UGAUACC------------CGGCCaGUUGc -5'
14384 3' -53.7 NC_003521.1 + 127307 0.68 0.965385
Target:  5'- -gGCGCGC-CUcgauguUGGcGuuGGUCAGCGg -3'
miRNA:   3'- gaUGUGCGuGAu-----ACC-CggCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 154650 0.68 0.965385
Target:  5'- -aGCACGUgccGCUGgccGaGGCCGG-CAGCGa -3'
miRNA:   3'- gaUGUGCG---UGAUa--C-CCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 73019 0.68 0.965385
Target:  5'- -gACAUGCGCgGUGGuGCUGGcUGACGg -3'
miRNA:   3'- gaUGUGCGUGaUACC-CGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 150913 0.68 0.962096
Target:  5'- aCUGCGCGCccuuccacgGCgUGUGGGCCgagcgcGGUCAGa- -3'
miRNA:   3'- -GAUGUGCG---------UG-AUACCCGG------CCAGUUgc -5'
14384 3' -53.7 NC_003521.1 + 128277 0.68 0.962096
Target:  5'- -aGCGCGUugcggAUGGuGUCGGUCAGCu -3'
miRNA:   3'- gaUGUGCGuga--UACC-CGGCCAGUUGc -5'
14384 3' -53.7 NC_003521.1 + 16451 0.68 0.961755
Target:  5'- uCUACACGaGCUGUuccGGGCCGGccUCAugaaggucuacguGCGg -3'
miRNA:   3'- -GAUGUGCgUGAUA---CCCGGCC--AGU-------------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.