miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 116870 0.68 0.958596
Target:  5'- cCUGCGCGCGCaGUGG-CgCGGcugCGGCGg -3'
miRNA:   3'- -GAUGUGCGUGaUACCcG-GCCa--GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 136071 0.68 0.958596
Target:  5'- gCUGCGCGCucaucuccacGCUGgaGGGCuCGGUguGCGu -3'
miRNA:   3'- -GAUGUGCG----------UGAUa-CCCG-GCCAguUGC- -5'
14384 3' -53.7 NC_003521.1 + 145946 0.68 0.954881
Target:  5'- -aACACGCccgaGCUGcUGGGCCGccUCAACa -3'
miRNA:   3'- gaUGUGCG----UGAU-ACCCGGCc-AGUUGc -5'
14384 3' -53.7 NC_003521.1 + 74116 0.68 0.954881
Target:  5'- -aGCugGCugUGgccGCUGGUCAACGc -3'
miRNA:   3'- gaUGugCGugAUaccCGGCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 209061 0.68 0.954881
Target:  5'- -gACugGCGCgaccccgAUGuGCCGGUCGagGCGg -3'
miRNA:   3'- gaUGugCGUGa------UACcCGGCCAGU--UGC- -5'
14384 3' -53.7 NC_003521.1 + 37352 0.68 0.954881
Target:  5'- -cGCACGUAUccgccGGGaCUGGUCGGCGa -3'
miRNA:   3'- gaUGUGCGUGaua--CCC-GGCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 86716 0.68 0.954881
Target:  5'- -gGC-CGCGagAUGGGCCGGUUcuuGACGc -3'
miRNA:   3'- gaUGuGCGUgaUACCCGGCCAG---UUGC- -5'
14384 3' -53.7 NC_003521.1 + 77733 0.69 0.950946
Target:  5'- -cGCugGCGCccgaggacGGGCCGGccUCGGCGu -3'
miRNA:   3'- gaUGugCGUGaua-----CCCGGCC--AGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 70646 0.69 0.946788
Target:  5'- -cACACGCACgcUGcGGCUGGUgcugCAGCu -3'
miRNA:   3'- gaUGUGCGUGauAC-CCGGCCA----GUUGc -5'
14384 3' -53.7 NC_003521.1 + 123964 0.69 0.946788
Target:  5'- aCUGCGCGCGCa---GGUcgucgCGGUCGGCGg -3'
miRNA:   3'- -GAUGUGCGUGauacCCG-----GCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 56091 0.69 0.942404
Target:  5'- gUGCACGcCACUGacGGGUaCGGUCuGCGa -3'
miRNA:   3'- gAUGUGC-GUGAUa-CCCG-GCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 112803 0.69 0.942404
Target:  5'- -gGCACGCGCUcUGGGaCGGccgCGACc -3'
miRNA:   3'- gaUGUGCGUGAuACCCgGCCa--GUUGc -5'
14384 3' -53.7 NC_003521.1 + 177719 0.7 0.927878
Target:  5'- uCUGCugGUACUGcuggaGGGCgGG-CAGCGc -3'
miRNA:   3'- -GAUGugCGUGAUa----CCCGgCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 100582 0.7 0.927878
Target:  5'- uUAC-CGC-CguagGGGCCGGUgGACGa -3'
miRNA:   3'- gAUGuGCGuGaua-CCCGGCCAgUUGC- -5'
14384 3' -53.7 NC_003521.1 + 101802 0.7 0.922575
Target:  5'- -gGCGCGCACgaagcccagGGGgCGGUCG-CGg -3'
miRNA:   3'- gaUGUGCGUGaua------CCCgGCCAGUuGC- -5'
14384 3' -53.7 NC_003521.1 + 68801 0.7 0.922575
Target:  5'- cCUGCGCGCcguccggauagACUugcGGGCCcuggcacagucGGUCAACGa -3'
miRNA:   3'- -GAUGUGCG-----------UGAua-CCCGG-----------CCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 139861 0.7 0.91704
Target:  5'- uCUGCACGaACUGcGGGUcgcgguacagcuCGGUCAGCGc -3'
miRNA:   3'- -GAUGUGCgUGAUaCCCG------------GCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 124278 0.7 0.911275
Target:  5'- uCUGCGgGCGCgagaGGGCUGGcUCAGCc -3'
miRNA:   3'- -GAUGUgCGUGaua-CCCGGCC-AGUUGc -5'
14384 3' -53.7 NC_003521.1 + 6343 0.7 0.90467
Target:  5'- -aACGCGCGCcagAUccggaucccagagGGGCCGGUCGgggucGCGg -3'
miRNA:   3'- gaUGUGCGUGa--UA-------------CCCGGCCAGU-----UGC- -5'
14384 3' -53.7 NC_003521.1 + 166277 0.71 0.885953
Target:  5'- -cACGCGCACggcGcGGCUGGUCcGCGu -3'
miRNA:   3'- gaUGUGCGUGauaC-CCGGCCAGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.