miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 2322 0.67 0.975061
Target:  5'- gCUGCGCGCcggccuccuggggcuGCUGacccUGGGCCGcGUCucCGc -3'
miRNA:   3'- -GAUGUGCG---------------UGAU----ACCCGGC-CAGuuGC- -5'
14384 3' -53.7 NC_003521.1 + 2445 0.68 0.969645
Target:  5'- cCUGCACGUucauccccgcgccccGCUAUGGguacgcgacggcGCCGGcCAGCu -3'
miRNA:   3'- -GAUGUGCG---------------UGAUACC------------CGGCCaGUUGc -5'
14384 3' -53.7 NC_003521.1 + 6343 0.7 0.90467
Target:  5'- -aACGCGCGCcagAUccggaucccagagGGGCCGGUCGgggucGCGg -3'
miRNA:   3'- gaUGUGCGUGa--UA-------------CCCGGCCAGU-----UGC- -5'
14384 3' -53.7 NC_003521.1 + 13622 0.66 0.987987
Target:  5'- -gGCGCGagGCUAuaaacUGGGCUGGgaagggCGGCGg -3'
miRNA:   3'- gaUGUGCg-UGAU-----ACCCGGCCa-----GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 16451 0.68 0.961755
Target:  5'- uCUACACGaGCUGUuccGGGCCGGccUCAugaaggucuacguGCGg -3'
miRNA:   3'- -GAUGUGCgUGAUA---CCCGGCC--AGU-------------UGC- -5'
14384 3' -53.7 NC_003521.1 + 16747 0.66 0.990632
Target:  5'- -gGCGCGCGCgccc-GCCGGagGACGa -3'
miRNA:   3'- gaUGUGCGUGauaccCGGCCagUUGC- -5'
14384 3' -53.7 NC_003521.1 + 19863 0.66 0.987987
Target:  5'- gCUGCAgCGCucccuGCUGacGGCCGcGUCGGCGc -3'
miRNA:   3'- -GAUGU-GCG-----UGAUacCCGGC-CAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 26308 0.66 0.987987
Target:  5'- --cCACGCGCUGUccgcgcuuccaGGGCCGGcUCucCa -3'
miRNA:   3'- gauGUGCGUGAUA-----------CCCGGCC-AGuuGc -5'
14384 3' -53.7 NC_003521.1 + 37314 0.67 0.98298
Target:  5'- uCUGCACGUcuccuCUGggugGGGgCGGUCG-CGg -3'
miRNA:   3'- -GAUGUGCGu----GAUa---CCCgGCCAGUuGC- -5'
14384 3' -53.7 NC_003521.1 + 37352 0.68 0.954881
Target:  5'- -cGCACGUAUccgccGGGaCUGGUCGGCGa -3'
miRNA:   3'- gaUGUGCGUGaua--CCC-GGCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 39881 0.66 0.986465
Target:  5'- gUGCACGUugggGUGGGCgugCGGUCGucccgGCGg -3'
miRNA:   3'- gAUGUGCGuga-UACCCG---GCCAGU-----UGC- -5'
14384 3' -53.7 NC_003521.1 + 45669 0.66 0.989374
Target:  5'- -cACACcCGCUAUcagGGGCCGGaCAccgaGCGg -3'
miRNA:   3'- gaUGUGcGUGAUA---CCCGGCCaGU----UGC- -5'
14384 3' -53.7 NC_003521.1 + 56091 0.69 0.942404
Target:  5'- gUGCACGcCACUGacGGGUaCGGUCuGCGa -3'
miRNA:   3'- gAUGUGC-GUGAUa-CCCG-GCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 57574 0.66 0.990632
Target:  5'- -cGCGCGC-CUucgagGGcGCCGG-CGGCGa -3'
miRNA:   3'- gaUGUGCGuGAua---CC-CGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 59054 0.67 0.981003
Target:  5'- aCUAcCGgGCGCUGUGGGCCuucucccuGGUgAucuGCGg -3'
miRNA:   3'- -GAU-GUgCGUGAUACCCGG--------CCAgU---UGC- -5'
14384 3' -53.7 NC_003521.1 + 59711 0.66 0.987987
Target:  5'- aCUGC-CGCGCcGUGGccgaGCUGGUgGACa -3'
miRNA:   3'- -GAUGuGCGUGaUACC----CGGCCAgUUGc -5'
14384 3' -53.7 NC_003521.1 + 59846 1.1 0.007112
Target:  5'- uCUACACGCACUAUGGGCCGGUCAACGg -3'
miRNA:   3'- -GAUGUGCGUGAUACCCGGCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 68801 0.7 0.922575
Target:  5'- cCUGCGCGCcguccggauagACUugcGGGCCcuggcacagucGGUCAACGa -3'
miRNA:   3'- -GAUGUGCG-----------UGAua-CCCGG-----------CCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 70646 0.69 0.946788
Target:  5'- -cACACGCACgcUGcGGCUGGUgcugCAGCu -3'
miRNA:   3'- gaUGUGCGUGauAC-CCGGCCA----GUUGc -5'
14384 3' -53.7 NC_003521.1 + 73019 0.68 0.965385
Target:  5'- -gACAUGCGCgGUGGuGCUGGcUGACGg -3'
miRNA:   3'- gaUGUGCGUGaUACC-CGGCCaGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.