miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 73829 0.66 0.990632
Target:  5'- cCUGgACGCGCUGacGGCCGagggaacgacGUCAACc -3'
miRNA:   3'- -GAUgUGCGUGAUacCCGGC----------CAGUUGc -5'
14384 3' -53.7 NC_003521.1 + 74116 0.68 0.954881
Target:  5'- -aGCugGCugUGgccGCUGGUCAACGc -3'
miRNA:   3'- gaUGugCGugAUaccCGGCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 77733 0.69 0.950946
Target:  5'- -cGCugGCGCccgaggacGGGCCGGccUCGGCGu -3'
miRNA:   3'- gaUGugCGUGaua-----CCCGGCC--AGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 86716 0.68 0.954881
Target:  5'- -gGC-CGCGagAUGGGCCGGUUcuuGACGc -3'
miRNA:   3'- gaUGuGCGUgaUACCCGGCCAG---UUGC- -5'
14384 3' -53.7 NC_003521.1 + 92251 0.66 0.987987
Target:  5'- -cGCGCGguCUuuuGGCCGGUC-GCGu -3'
miRNA:   3'- gaUGUGCguGAuacCCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 98523 0.76 0.655634
Target:  5'- -gACGCGCGCggcUGGGCCGcugCAGCGg -3'
miRNA:   3'- gaUGUGCGUGau-ACCCGGCca-GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 99031 0.67 0.981813
Target:  5'- ---gGCGCcgGCUccGGGCCGGUCcgagguagggacuuuGACGa -3'
miRNA:   3'- gaugUGCG--UGAuaCCCGGCCAG---------------UUGC- -5'
14384 3' -53.7 NC_003521.1 + 100582 0.7 0.927878
Target:  5'- uUAC-CGC-CguagGGGCCGGUgGACGa -3'
miRNA:   3'- gAUGuGCGuGaua-CCCGGCCAgUUGC- -5'
14384 3' -53.7 NC_003521.1 + 101802 0.7 0.922575
Target:  5'- -gGCGCGCACgaagcccagGGGgCGGUCG-CGg -3'
miRNA:   3'- gaUGUGCGUGaua------CCCgGCCAGUuGC- -5'
14384 3' -53.7 NC_003521.1 + 104007 0.67 0.974039
Target:  5'- gUACAUGCGCacgccgGGGUC-GUCGGCGg -3'
miRNA:   3'- gAUGUGCGUGaua---CCCGGcCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 106546 0.73 0.772432
Target:  5'- gCUGaaaGCGCGa-GUGGGCCGGUC-GCGa -3'
miRNA:   3'- -GAUg--UGCGUgaUACCCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 111195 0.67 0.98298
Target:  5'- --cCGCGgACgGUGGGCUGGgCGAUGg -3'
miRNA:   3'- gauGUGCgUGaUACCCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 112803 0.69 0.942404
Target:  5'- -gGCACGCGCUcUGGGaCGGccgCGACc -3'
miRNA:   3'- gaUGUGCGUGAuACCCgGCCa--GUUGc -5'
14384 3' -53.7 NC_003521.1 + 115366 0.66 0.986465
Target:  5'- -cACGCGuCGCUGgccaGGGCCGG-CAuguGCa -3'
miRNA:   3'- gaUGUGC-GUGAUa---CCCGGCCaGU---UGc -5'
14384 3' -53.7 NC_003521.1 + 116870 0.68 0.958596
Target:  5'- cCUGCGCGCGCaGUGG-CgCGGcugCGGCGg -3'
miRNA:   3'- -GAUGUGCGUGaUACCcG-GCCa--GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 117395 0.67 0.98298
Target:  5'- -gGCACGCGCUGUGcuGGCaccgGGUgGAgGg -3'
miRNA:   3'- gaUGUGCGUGAUAC--CCGg---CCAgUUgC- -5'
14384 3' -53.7 NC_003521.1 + 122686 0.67 0.981003
Target:  5'- -aGCAcCGacaGCUGcgGGGCCGGUCGGu- -3'
miRNA:   3'- gaUGU-GCg--UGAUa-CCCGGCCAGUUgc -5'
14384 3' -53.7 NC_003521.1 + 123964 0.69 0.946788
Target:  5'- aCUGCGCGCGCa---GGUcgucgCGGUCGGCGg -3'
miRNA:   3'- -GAUGUGCGUGauacCCG-----GCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 124278 0.7 0.911275
Target:  5'- uCUGCGgGCGCgagaGGGCUGGcUCAGCc -3'
miRNA:   3'- -GAUGUgCGUGaua-CCCGGCC-AGUUGc -5'
14384 3' -53.7 NC_003521.1 + 125247 0.67 0.974039
Target:  5'- -gACGCGCACg--GGGgCGaGaUCAACGu -3'
miRNA:   3'- gaUGUGCGUGauaCCCgGC-C-AGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.