miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 240108 0.66 0.986465
Target:  5'- gUGCACGUugggGUGGGCgugCGGUCGucccgGCGg -3'
miRNA:   3'- gAUGUGCGuga-UACCCG---GCCAGU-----UGC- -5'
14384 3' -53.7 NC_003521.1 + 209061 0.68 0.954881
Target:  5'- -gACugGCGCgaccccgAUGuGCCGGUCGagGCGg -3'
miRNA:   3'- gaUGugCGUGa------UACcCGGCCAGU--UGC- -5'
14384 3' -53.7 NC_003521.1 + 202550 0.66 0.988558
Target:  5'- gCUGCGCGCcggccuccuggggcuGCUGacccUGGGCCGcGUCu-CGc -3'
miRNA:   3'- -GAUGUGCG---------------UGAU----ACCCGGC-CAGuuGC- -5'
14384 3' -53.7 NC_003521.1 + 197482 0.73 0.781586
Target:  5'- --uCACGCGCggcGGGCCGGaCGGCGc -3'
miRNA:   3'- gauGUGCGUGauaCCCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 196320 0.71 0.864674
Target:  5'- aUGCA-GCGC-AUGGGCCGGUUguuGCGc -3'
miRNA:   3'- gAUGUgCGUGaUACCCGGCCAGu--UGC- -5'
14384 3' -53.7 NC_003521.1 + 177719 0.7 0.927878
Target:  5'- uCUGCugGUACUGcuggaGGGCgGG-CAGCGc -3'
miRNA:   3'- -GAUGugCGUGAUa----CCCGgCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 175815 0.75 0.695575
Target:  5'- aUGCGCGUGCUAgGGGCgCGGUCcaagaAGCGg -3'
miRNA:   3'- gAUGUGCGUGAUaCCCG-GCCAG-----UUGC- -5'
14384 3' -53.7 NC_003521.1 + 173031 0.67 0.978858
Target:  5'- -aGCACGCGCUc---GCCGGUgGGCa -3'
miRNA:   3'- gaUGUGCGUGAuaccCGGCCAgUUGc -5'
14384 3' -53.7 NC_003521.1 + 171283 0.66 0.990632
Target:  5'- cCUGCGCuGUAUccgcGUGGGCUGGaaGGCGg -3'
miRNA:   3'- -GAUGUG-CGUGa---UACCCGGCCagUUGC- -5'
14384 3' -53.7 NC_003521.1 + 167620 0.78 0.555541
Target:  5'- -cGCAgGCGCUcgGGGUCGGUC-ACGu -3'
miRNA:   3'- gaUGUgCGUGAuaCCCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 166277 0.71 0.885953
Target:  5'- -cACGCGCACggcGcGGCUGGUCcGCGu -3'
miRNA:   3'- gaUGUGCGUGauaC-CCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 162882 0.66 0.987987
Target:  5'- -gGCGCGCGCagGUGGGCCGcu--ACu -3'
miRNA:   3'- gaUGUGCGUGa-UACCCGGCcaguUGc -5'
14384 3' -53.7 NC_003521.1 + 162245 0.67 0.981003
Target:  5'- -cGCugGCGggGUGGGC--GUCAACGg -3'
miRNA:   3'- gaUGugCGUgaUACCCGgcCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 154749 0.71 0.871976
Target:  5'- uCUGCugGC-CUAcuGGCCGGUCAuCGc -3'
miRNA:   3'- -GAUGugCGuGAUacCCGGCCAGUuGC- -5'
14384 3' -53.7 NC_003521.1 + 154650 0.68 0.965385
Target:  5'- -aGCACGUgccGCUGgccGaGGCCGG-CAGCGa -3'
miRNA:   3'- gaUGUGCG---UGAUa--C-CCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 150913 0.68 0.962096
Target:  5'- aCUGCGCGCccuuccacgGCgUGUGGGCCgagcgcGGUCAGa- -3'
miRNA:   3'- -GAUGUGCG---------UG-AUACCCGG------CCAGUUgc -5'
14384 3' -53.7 NC_003521.1 + 149407 0.67 0.978858
Target:  5'- -cGCAUGCGCacggucgcccUGUGGGCCGGgauuugggUCGGgGg -3'
miRNA:   3'- gaUGUGCGUG----------AUACCCGGCC--------AGUUgC- -5'
14384 3' -53.7 NC_003521.1 + 145946 0.68 0.954881
Target:  5'- -aACACGCccgaGCUGcUGGGCCGccUCAACa -3'
miRNA:   3'- gaUGUGCG----UGAU-ACCCGGCc-AGUUGc -5'
14384 3' -53.7 NC_003521.1 + 145847 0.67 0.98298
Target:  5'- aCUAUuaACGCGuCUcUGGGCCcGG-CGGCGg -3'
miRNA:   3'- -GAUG--UGCGU-GAuACCCGG-CCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 143536 0.67 0.981003
Target:  5'- -cGCACGCGCgcc--GCCGG-CGACGa -3'
miRNA:   3'- gaUGUGCGUGauaccCGGCCaGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.