miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 154650 0.68 0.965385
Target:  5'- -aGCACGUgccGCUGgccGaGGCCGG-CAGCGa -3'
miRNA:   3'- gaUGUGCG---UGAUa--C-CCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 70646 0.69 0.946788
Target:  5'- -cACACGCACgcUGcGGCUGGUgcugCAGCu -3'
miRNA:   3'- gaUGUGCGUGauAC-CCGGCCA----GUUGc -5'
14384 3' -53.7 NC_003521.1 + 86716 0.68 0.954881
Target:  5'- -gGC-CGCGagAUGGGCCGGUUcuuGACGc -3'
miRNA:   3'- gaUGuGCGUgaUACCCGGCCAG---UUGC- -5'
14384 3' -53.7 NC_003521.1 + 145946 0.68 0.954881
Target:  5'- -aACACGCccgaGCUGcUGGGCCGccUCAACa -3'
miRNA:   3'- gaUGUGCG----UGAU-ACCCGGCc-AGUUGc -5'
14384 3' -53.7 NC_003521.1 + 136071 0.68 0.958596
Target:  5'- gCUGCGCGCucaucuccacGCUGgaGGGCuCGGUguGCGu -3'
miRNA:   3'- -GAUGUGCG----------UGAUa-CCCG-GCCAguUGC- -5'
14384 3' -53.7 NC_003521.1 + 116870 0.68 0.958596
Target:  5'- cCUGCGCGCGCaGUGG-CgCGGcugCGGCGg -3'
miRNA:   3'- -GAUGUGCGUGaUACCcG-GCCa--GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 128277 0.68 0.962096
Target:  5'- -aGCGCGUugcggAUGGuGUCGGUCAGCu -3'
miRNA:   3'- gaUGUGCGuga--UACC-CGGCCAGUUGc -5'
14384 3' -53.7 NC_003521.1 + 150913 0.68 0.962096
Target:  5'- aCUGCGCGCccuuccacgGCgUGUGGGCCgagcgcGGUCAGa- -3'
miRNA:   3'- -GAUGUGCG---------UG-AUACCCGG------CCAGUUgc -5'
14384 3' -53.7 NC_003521.1 + 127307 0.68 0.965385
Target:  5'- -gGCGCGC-CUcgauguUGGcGuuGGUCAGCGg -3'
miRNA:   3'- gaUGUGCGuGAu-----ACC-CggCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 112803 0.69 0.942404
Target:  5'- -gGCACGCGCUcUGGGaCGGccgCGACc -3'
miRNA:   3'- gaUGUGCGUGAuACCCgGCCa--GUUGc -5'
14384 3' -53.7 NC_003521.1 + 100582 0.7 0.927878
Target:  5'- uUAC-CGC-CguagGGGCCGGUgGACGa -3'
miRNA:   3'- gAUGuGCGuGaua-CCCGGCCAgUUGC- -5'
14384 3' -53.7 NC_003521.1 + 68801 0.7 0.922575
Target:  5'- cCUGCGCGCcguccggauagACUugcGGGCCcuggcacagucGGUCAACGa -3'
miRNA:   3'- -GAUGUGCG-----------UGAua-CCCGG-----------CCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 106546 0.73 0.772432
Target:  5'- gCUGaaaGCGCGa-GUGGGCCGGUC-GCGa -3'
miRNA:   3'- -GAUg--UGCGUgaUACCCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 197482 0.73 0.781586
Target:  5'- --uCACGCGCggcGGGCCGGaCGGCGc -3'
miRNA:   3'- gauGUGCGUGauaCCCGGCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 154749 0.71 0.871976
Target:  5'- uCUGCugGC-CUAcuGGCCGGUCAuCGc -3'
miRNA:   3'- -GAUGugCGuGAUacCCGGCCAGUuGC- -5'
14384 3' -53.7 NC_003521.1 + 166277 0.71 0.885953
Target:  5'- -cACGCGCACggcGcGGCUGGUCcGCGu -3'
miRNA:   3'- gaUGUGCGUGauaC-CCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 6343 0.7 0.90467
Target:  5'- -aACGCGCGCcagAUccggaucccagagGGGCCGGUCGgggucGCGg -3'
miRNA:   3'- gaUGUGCGUGa--UA-------------CCCGGCCAGU-----UGC- -5'
14384 3' -53.7 NC_003521.1 + 124278 0.7 0.911275
Target:  5'- uCUGCGgGCGCgagaGGGCUGGcUCAGCc -3'
miRNA:   3'- -GAUGUgCGUGaua-CCCGGCC-AGUUGc -5'
14384 3' -53.7 NC_003521.1 + 139861 0.7 0.91704
Target:  5'- uCUGCACGaACUGcGGGUcgcgguacagcuCGGUCAGCGc -3'
miRNA:   3'- -GAUGUGCgUGAUaCCCG------------GCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 101802 0.7 0.922575
Target:  5'- -gGCGCGCACgaagcccagGGGgCGGUCG-CGg -3'
miRNA:   3'- gaUGUGCGUGaua------CCCgGCCAGUuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.