miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14384 3' -53.7 NC_003521.1 + 167620 0.78 0.555541
Target:  5'- -cGCAgGCGCUcgGGGUCGGUC-ACGu -3'
miRNA:   3'- gaUGUgCGUGAuaCCCGGCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 149407 0.67 0.978858
Target:  5'- -cGCAUGCGCacggucgcccUGUGGGCCGGgauuugggUCGGgGg -3'
miRNA:   3'- gaUGUGCGUG----------AUACCCGGCC--------AGUUgC- -5'
14384 3' -53.7 NC_003521.1 + 59054 0.67 0.981003
Target:  5'- aCUAcCGgGCGCUGUGGGCCuucucccuGGUgAucuGCGg -3'
miRNA:   3'- -GAU-GUgCGUGAUACCCGG--------CCAgU---UGC- -5'
14384 3' -53.7 NC_003521.1 + 171283 0.66 0.990632
Target:  5'- cCUGCGCuGUAUccgcGUGGGCUGGaaGGCGg -3'
miRNA:   3'- -GAUGUG-CGUGa---UACCCGGCCagUUGC- -5'
14384 3' -53.7 NC_003521.1 + 177719 0.7 0.927878
Target:  5'- uCUGCugGUACUGcuggaGGGCgGG-CAGCGc -3'
miRNA:   3'- -GAUGugCGUGAUa----CCCGgCCaGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 56091 0.69 0.942404
Target:  5'- gUGCACGcCACUGacGGGUaCGGUCuGCGa -3'
miRNA:   3'- gAUGUGC-GUGAUa-CCCG-GCCAGuUGC- -5'
14384 3' -53.7 NC_003521.1 + 77733 0.69 0.950946
Target:  5'- -cGCugGCGCccgaggacGGGCCGGccUCGGCGu -3'
miRNA:   3'- gaUGugCGUGaua-----CCCGGCC--AGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 209061 0.68 0.954881
Target:  5'- -gACugGCGCgaccccgAUGuGCCGGUCGagGCGg -3'
miRNA:   3'- gaUGugCGUGa------UACcCGGCCAGU--UGC- -5'
14384 3' -53.7 NC_003521.1 + 16451 0.68 0.961755
Target:  5'- uCUACACGaGCUGUuccGGGCCGGccUCAugaaggucuacguGCGg -3'
miRNA:   3'- -GAUGUGCgUGAUA---CCCGGCC--AGU-------------UGC- -5'
14384 3' -53.7 NC_003521.1 + 2322 0.67 0.975061
Target:  5'- gCUGCGCGCcggccuccuggggcuGCUGacccUGGGCCGcGUCucCGc -3'
miRNA:   3'- -GAUGUGCG---------------UGAU----ACCCGGC-CAGuuGC- -5'
14384 3' -53.7 NC_003521.1 + 2445 0.68 0.969645
Target:  5'- cCUGCACGUucauccccgcgccccGCUAUGGguacgcgacggcGCCGGcCAGCu -3'
miRNA:   3'- -GAUGUGCG---------------UGAUACC------------CGGCCaGUUGc -5'
14384 3' -53.7 NC_003521.1 + 37352 0.68 0.954881
Target:  5'- -cGCACGUAUccgccGGGaCUGGUCGGCGa -3'
miRNA:   3'- gaUGUGCGUGaua--CCC-GGCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 98523 0.76 0.655634
Target:  5'- -gACGCGCGCggcUGGGCCGcugCAGCGg -3'
miRNA:   3'- gaUGUGCGUGau-ACCCGGCca-GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 104007 0.67 0.974039
Target:  5'- gUACAUGCGCacgccgGGGUC-GUCGGCGg -3'
miRNA:   3'- gAUGUGCGUGaua---CCCGGcCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 175815 0.75 0.695575
Target:  5'- aUGCGCGUGCUAgGGGCgCGGUCcaagaAGCGg -3'
miRNA:   3'- gAUGUGCGUGAUaCCCG-GCCAG-----UUGC- -5'
14384 3' -53.7 NC_003521.1 + 74116 0.68 0.954881
Target:  5'- -aGCugGCugUGgccGCUGGUCAACGc -3'
miRNA:   3'- gaUGugCGugAUaccCGGCCAGUUGC- -5'
14384 3' -53.7 NC_003521.1 + 136866 0.67 0.974039
Target:  5'- aUGCACGgACUcgcggcggGUGGcGCCGGUguucgcggucgaCAACGa -3'
miRNA:   3'- gAUGUGCgUGA--------UACC-CGGCCA------------GUUGC- -5'
14384 3' -53.7 NC_003521.1 + 173031 0.67 0.978858
Target:  5'- -aGCACGCGCUc---GCCGGUgGGCa -3'
miRNA:   3'- gaUGUGCGUGAuaccCGGCCAgUUGc -5'
14384 3' -53.7 NC_003521.1 + 196320 0.71 0.864674
Target:  5'- aUGCA-GCGC-AUGGGCCGGUUguuGCGc -3'
miRNA:   3'- gAUGUgCGUGaUACCCGGCCAGu--UGC- -5'
14384 3' -53.7 NC_003521.1 + 123964 0.69 0.946788
Target:  5'- aCUGCGCGCGCa---GGUcgucgCGGUCGGCGg -3'
miRNA:   3'- -GAUGUGCGUGauacCCG-----GCCAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.