Results 61 - 80 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 111867 | 0.66 | 0.730167 |
Target: 5'- -----aGCGCCACGCCGCcagcCCCUCg -3' miRNA: 3'- gcccagCGUGGUGCGGCGac--GGGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 154014 | 0.66 | 0.733785 |
Target: 5'- aCGGGUCGCGCagCACcuggugcaugcucuuGCCGCggcaggcGCCCauaaagCCg -3' miRNA: 3'- -GCCCAGCGUG--GUG---------------CGGCGa------CGGGa-----GG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 202582 | 0.66 | 0.73649 |
Target: 5'- uGGGcCGCgucucgccccgcccGCCGagGCCGCccUGCgCCUCCu -3' miRNA: 3'- gCCCaGCG--------------UGGUg-CGGCG--ACG-GGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 167572 | 0.66 | 0.739188 |
Target: 5'- aCGGcGcUCGuCGUCACGCCGCUGCUgUUg -3' miRNA: 3'- -GCC-C-AGC-GUGGUGCGGCGACGGgAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 223973 | 0.66 | 0.739188 |
Target: 5'- aGcGGUCguugucagGCACCACGUgaUUGUCCUCCu -3' miRNA: 3'- gC-CCAG--------CGUGGUGCGgcGACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 128927 | 0.66 | 0.739188 |
Target: 5'- aGGGccuggCGCGCCAgCGUgGC-GUUCUCCa -3' miRNA: 3'- gCCCa----GCGUGGU-GCGgCGaCGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 7381 | 0.66 | 0.739188 |
Target: 5'- uGGGUaCGU--UACGCC-CUGCCCggCCa -3' miRNA: 3'- gCCCA-GCGugGUGCGGcGACGGGa-GG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 134716 | 0.66 | 0.739188 |
Target: 5'- aCGGc---CGCCACGCC-CUGCCCgaggCCu -3' miRNA: 3'- -GCCcagcGUGGUGCGGcGACGGGa---GG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 239751 | 0.66 | 0.72472 |
Target: 5'- gGGGUCGCGCgGCGagaGCUGgcgcaggucgguggcCCCgacgCCg -3' miRNA: 3'- gCCCAGCGUGgUGCgg-CGAC---------------GGGa---GG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 54521 | 0.66 | 0.721074 |
Target: 5'- aGGaUCuGCACgGCGCCGCUgggGCCCg-- -3' miRNA: 3'- gCCcAG-CGUGgUGCGGCGA---CGGGagg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 129964 | 0.66 | 0.721074 |
Target: 5'- gCGGGcCGCugCucuacgugcacCGUCGCUGCCgCUgCg -3' miRNA: 3'- -GCCCaGCGugGu----------GCGGCGACGG-GAgG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 104692 | 0.66 | 0.721074 |
Target: 5'- gGGGcCGUggGCgGCGUCGacgUGCCCUCg -3' miRNA: 3'- gCCCaGCG--UGgUGCGGCg--ACGGGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 174217 | 0.66 | 0.763129 |
Target: 5'- gGGGUCGCGCgggucgggcaggggCGCGUCGgaGCUCa-- -3' miRNA: 3'- gCCCAGCGUG--------------GUGCGGCgaCGGGagg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 72255 | 0.67 | 0.656007 |
Target: 5'- uGGGUCaGcCGCCACcuuacCCGCaGCCCgCCa -3' miRNA: 3'- gCCCAG-C-GUGGUGc----GGCGaCGGGaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 168272 | 0.67 | 0.656007 |
Target: 5'- aGaGGUCGCgagacgacgacACCGuCGCCGCcGC-CUCCg -3' miRNA: 3'- gC-CCAGCG-----------UGGU-GCGGCGaCGgGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 142554 | 0.67 | 0.711916 |
Target: 5'- aCGGcuuGUCGCccGCCAgGCuCGCcgUGCCCgCCg -3' miRNA: 3'- -GCC---CAGCG--UGGUgCG-GCG--ACGGGaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 181816 | 0.67 | 0.692506 |
Target: 5'- gGGGUCGUcuccguaGCCuuCGUCGUccCCCUCCu -3' miRNA: 3'- gCCCAGCG-------UGGu-GCGGCGacGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 65769 | 0.67 | 0.693435 |
Target: 5'- aCGGGcCGCAUCACaCCGCcGCCggacaaCUUCg -3' miRNA: 3'- -GCCCaGCGUGGUGcGGCGaCGG------GAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 94723 | 0.67 | 0.711916 |
Target: 5'- cCGGGUC-CugCGCGUCGUUGCUg--- -3' miRNA: 3'- -GCCCAGcGugGUGCGGCGACGGgagg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 123573 | 0.67 | 0.693435 |
Target: 5'- aGGcaGUCGUGCaGCGCCGCgugaugcgUGCCCUUg -3' miRNA: 3'- gCC--CAGCGUGgUGCGGCG--------ACGGGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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