miRNA display CGI


Results 81 - 100 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 56904 0.67 0.693435
Target:  5'- uGGccGUCGCGacaGCGCCGCaGCaccgCCUCCa -3'
miRNA:   3'- gCC--CAGCGUgg-UGCGGCGaCG----GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 29010 0.67 0.693435
Target:  5'- aGGG-CGCGCuCAa---GCUGCUCUCCg -3'
miRNA:   3'- gCCCaGCGUG-GUgcggCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 123573 0.67 0.693435
Target:  5'- aGGcaGUCGUGCaGCGCCGCgugaugcgUGCCCUUg -3'
miRNA:   3'- gCC--CAGCGUGgUGCGGCG--------ACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 181816 0.67 0.692506
Target:  5'- gGGGUCGUcuccguaGCCuuCGUCGUccCCCUCCu -3'
miRNA:   3'- gCCCAGCG-------UGGu-GCGGCGacGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 182778 0.67 0.684126
Target:  5'- uCGGGUgGcCGCCagcagcaacACGCgCGC-GCCCUCg -3'
miRNA:   3'- -GCCCAgC-GUGG---------UGCG-GCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 108452 0.67 0.674781
Target:  5'- gCGGGUgUGCGgCGUGCCGCUGauaCCCUgCa -3'
miRNA:   3'- -GCCCA-GCGUgGUGCGGCGAC---GGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 18980 0.67 0.710997
Target:  5'- gGGGUcgaggaCGCGCCGCGCgacgagggagacaCGCccGCCCcgCCg -3'
miRNA:   3'- gCCCA------GCGUGGUGCG-------------GCGa-CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 153721 0.67 0.703625
Target:  5'- uGGG-CGCcacgcaggccuucaACCuggaccucaaccccuACGCCGCcGCCUUCCa -3'
miRNA:   3'- gCCCaGCG--------------UGG---------------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 206319 0.67 0.702701
Target:  5'- cCGcGGcCGCuACCuGCGCuCGCUGCUCUgCu -3'
miRNA:   3'- -GC-CCaGCG-UGG-UGCG-GCGACGGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 185072 0.67 0.702701
Target:  5'- -cGGcCGCGCC-UGUCGCUGCCgC-CCg -3'
miRNA:   3'- gcCCaGCGUGGuGCGGCGACGG-GaGG- -5'
14387 3' -62.8 NC_003521.1 + 223211 0.67 0.702701
Target:  5'- gCGGGuUCGUA-UACGCCGCgacGCCUggcgcgUCCa -3'
miRNA:   3'- -GCCC-AGCGUgGUGCGGCGa--CGGG------AGG- -5'
14387 3' -62.8 NC_003521.1 + 99364 0.67 0.702701
Target:  5'- gCGGcuUCGCACCAC-CUGCaGCaCCUCUc -3'
miRNA:   3'- -GCCc-AGCGUGGUGcGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 95659 0.67 0.702701
Target:  5'- aCGGaGUUGCGCgaCugGCCGC-GCgaCUCCu -3'
miRNA:   3'- -GCC-CAGCGUG--GugCGGCGaCGg-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 216571 0.67 0.699926
Target:  5'- -aGGUCGcCGCCGauauaccgcccgacCGcCCGCUGCCCaacCCg -3'
miRNA:   3'- gcCCAGC-GUGGU--------------GC-GGCGACGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 148820 0.67 0.693435
Target:  5'- --cGcCGCGCCuCGCCGCUcCCgCUCCg -3'
miRNA:   3'- gccCaGCGUGGuGCGGCGAcGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 124028 0.67 0.693435
Target:  5'- gGGGUCGCggccguagacgGCCAgcgUGCCGCggcggcgGCCCa-- -3'
miRNA:   3'- gCCCAGCG-----------UGGU---GCGGCGa------CGGGagg -5'
14387 3' -62.8 NC_003521.1 + 16386 0.67 0.684126
Target:  5'- ----aCGCACCugGaCCGCUcGCCCaCCa -3'
miRNA:   3'- gcccaGCGUGGugC-GGCGA-CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 75050 0.67 0.683193
Target:  5'- gCGGGcuggccuUCgGCACgAugaugggcaagcCGCCGCcGCCCUCCc -3'
miRNA:   3'- -GCCC-------AG-CGUGgU------------GCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 13917 0.67 0.711916
Target:  5'- gGGGcCGCggagGCCGCgcugGCCGCcguggUGCCC-CCg -3'
miRNA:   3'- gCCCaGCG----UGGUG----CGGCG-----ACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 29997 0.67 0.693435
Target:  5'- aGGGgacgaGCGCCACGgaCCGCUGUCggaacagaacugUUCCg -3'
miRNA:   3'- gCCCag---CGUGGUGC--GGCGACGG------------GAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.