miRNA display CGI


Results 101 - 120 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 32874 0.67 0.662588
Target:  5'- uCGGuuuggCGC-CCGCGCCGCcggugcugccgccgUGCCCgCCg -3'
miRNA:   3'- -GCCca---GCGuGGUGCGGCG--------------ACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 53152 0.67 0.656007
Target:  5'- aGGGcgCGUAacaguaCACGCgGCcGCCCUCg -3'
miRNA:   3'- gCCCa-GCGUg-----GUGCGgCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 162992 0.67 0.656007
Target:  5'- aCGGGUgGCcCCAacgagaGCgCGCUGCUCaCCa -3'
miRNA:   3'- -GCCCAgCGuGGUg-----CG-GCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 162208 0.67 0.656007
Target:  5'- uGGGgCGaGCCGCGCaguCGgUGCCuCUCCg -3'
miRNA:   3'- gCCCaGCgUGGUGCG---GCgACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 16386 0.67 0.684126
Target:  5'- ----aCGCACCugGaCCGCUcGCCCaCCa -3'
miRNA:   3'- gcccaGCGUGGugC-GGCGA-CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 75050 0.67 0.683193
Target:  5'- gCGGGcuggccuUCgGCACgAugaugggcaagcCGCCGCcGCCCUCCc -3'
miRNA:   3'- -GCCC-------AG-CGUGgU------------GCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 108452 0.67 0.674781
Target:  5'- gCGGGUgUGCGgCGUGCCGCUGauaCCCUgCa -3'
miRNA:   3'- -GCCCA-GCGUgGUGCGGCGAC---GGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 101912 0.67 0.674781
Target:  5'- aGGGcaggCGCACCGagcgGCCGUggugguagaUGCCCgugUCCa -3'
miRNA:   3'- gCCCa---GCGUGGUg---CGGCG---------ACGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 116167 0.67 0.674781
Target:  5'- -cGGUgCGCACC-UGCUGCUGCuCCUguggCCg -3'
miRNA:   3'- gcCCA-GCGUGGuGCGGCGACG-GGA----GG- -5'
14387 3' -62.8 NC_003521.1 + 29010 0.67 0.693435
Target:  5'- aGGG-CGCGCuCAa---GCUGCUCUCCg -3'
miRNA:   3'- gCCCaGCGUG-GUgcggCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 123573 0.67 0.693435
Target:  5'- aGGcaGUCGUGCaGCGCCGCgugaugcgUGCCCUUg -3'
miRNA:   3'- gCC--CAGCGUGgUGCGGCG--------ACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 181816 0.67 0.692506
Target:  5'- gGGGUCGUcuccguaGCCuuCGUCGUccCCCUCCu -3'
miRNA:   3'- gCCCAGCG-------UGGu-GCGGCGacGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 145635 0.67 0.665405
Target:  5'- cCGGG-CGUggaguuCCGCGCCGagcgcgaggUGCCCUCg -3'
miRNA:   3'- -GCCCaGCGu-----GGUGCGGCg--------ACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 190846 0.67 0.684126
Target:  5'- cCGGcucccUCGaccCACC-CGCCGCUcGUCCUCCu -3'
miRNA:   3'- -GCCc----AGC---GUGGuGCGGCGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 116776 0.67 0.684126
Target:  5'- uGGGcCGcCGCCGCgGCaCGCUGgCCgUCUa -3'
miRNA:   3'- gCCCaGC-GUGGUG-CG-GCGAC-GGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 74145 0.67 0.684126
Target:  5'- aCGuGG-CGCGCCACggggcccagguGCCGCUGgCCgacugcgCCg -3'
miRNA:   3'- -GC-CCaGCGUGGUG-----------CGGCGACgGGa------GG- -5'
14387 3' -62.8 NC_003521.1 + 214505 0.67 0.684126
Target:  5'- aGGG-CGUugCugGgaugcuuguagUCGgUGCCCUCCa -3'
miRNA:   3'- gCCCaGCGugGugC-----------GGCgACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 160295 0.67 0.674781
Target:  5'- --cGUCGUACUcguCGUCGCUGCCgcCUCCc -3'
miRNA:   3'- gccCAGCGUGGu--GCGGCGACGG--GAGG- -5'
14387 3' -62.8 NC_003521.1 + 209515 0.67 0.674781
Target:  5'- gGGGUCacgGUgACCGuCGCCGCUGCCg--- -3'
miRNA:   3'- gCCCAG---CG-UGGU-GCGGCGACGGgagg -5'
14387 3' -62.8 NC_003521.1 + 205018 0.67 0.674781
Target:  5'- aGGuucUCGC-CCACGCCGCcguagucgGCCUUCg -3'
miRNA:   3'- gCCc--AGCGuGGUGCGGCGa-------CGGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.